Oncorhynchus masou masou (cherry salmon): 135549828
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Entry
135549828 CDS
T10723
Name
(RefSeq) collagen alpha-1(XXII) chain-like isoform X1
KO
K16630
collagen type XXII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
135549828
NCBI-ProteinID:
XP_064836229
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All DBs
Position
12:30123339..30186197
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AA seq
1624 aa
AA seq
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MELRLGCRASLVLVILVLTLSGLRVDAQNRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPTTEFNLGRYSTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAARGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIAAEPKNAHMFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGPRFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKLIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMIIYCDSKHAELETCCDLPTGPCPKKVVTEAPPIEIPTPTPAREEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGEKGDTGALGAAGPSGLKGARGETGKVISVKGDRGEKGDPGRR
GTSGDEGSKGEKGTSGAAGLAGIDGSKGERGESGLAGDQGLPGPLGPKGIEGDSGLPGSS
GPKGVGGEKGLKGDKGSGGLRGAKGIDGFPGKPGVPGKDGLGGLTGAPGAAGVKGEKGEM
GPAGMPGDMVQSEGLKGVDGPPGPRGPPGPDGPPGPPGAPGQLGLPGEPGEFGQRGKKGE
SGLPGVDGLPGPPGPQGPPGGQGNPGKTGPPGLPGEIGFSGKLGEPGKAGLPGNDGLDGV
PGNDGDKGPRGESGLDGFPGKPGPKGEEGTPGPRGPGGESGPVGLTGQPGVVGPRGEKGG
QGDRGQDGSFGPKGDKGDKGDTGPKGTPGIPGNVANVIPEPGEPGNPGARGEKGEQGNPG
EIGQRGLPGEPGFKGLAGPQGPKGDIGPKGETGRQGDPGPPGLQGTQGTRGLPGNVGIPG
TLGPPGIAGQRGERGDLGKEGRAGPPGPPGDAGIQGPPGLPGKGKEGQNGDPGQRGIEGP
PGQKGQPGSQGLQGVPGDRGPPGEGKVGPSGPSGPNGAVGSPGMRGLPGVAGTQGPAGHH
GLPGRPGEKGSPGEPGAAADLSDVNLKDVCSECPAGPPGQTGLPGTPGDKGPAGPPGKNG
QDGYQGQAGPTGTTGPPGANGEKGVKGDRGPQGGPGDKGETGHTGPPGHPGAAGIMGNPG
NDGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRPGEQGEPGKQGETG
PPGQQGLRGMPGFKGHRGEPGQPGSKGEDGKEGRNGPEGKPGQDGNNGPPGPEGLAGRRG
ENGKPGEPGPSGKPGAPGTPGQAGAKGDPGNPGLPGFSGPKGPSGPAGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGPVGDPGMPGNQGLPGRKGHTGMMGMSGPPGEVGLTGPHG
TPGNPGQPGPRGESPSLETMRRLIQEELAKALDAKMAYLMAQIQPAHVKSTAGRPGPPGP
SGKEGSDGRPGPPGEPGMPGQNGGDGMRGPMGPKGERGSRGDKGENGVGQRGETGPSGPI
GPAGMPGYGKDGQPGAAGAQGEPGNPGPHGQAGPSGPPGQCDPSQCAYYASLGARPHTKN
VKGN
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactgggatgcagggcttccctggtcctggtcatactggtcctgacactc
tcaggactgagggttgatgctcagaacagggcaggctgtaagaacgtgcactatgacctg
gtgttcatcctggacacgtcgtccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggccgtg
gtacgctacagcgaccggcccaccacagagttcaacctgggacggtacagcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggac
gccataagctacaccaccaccaacatcttcacagagcgggccggggccaggcctgccgcc
aggggcatccagaaggtggctatcctcctgacggacgggaggagccaggattacgtgttg
gagccttccaaggcggcggcgaaggccggggtgaggatgttcgcagtgggcatcggggag
gctctgaaggtggaactcgaagagatcgctgcggaacctaagaacgctcacatgttccat
gtgacagactttaacgccatcgacaagatcagagggcggctgaggagacggctctgtgaa
aacgtgctgtgccccaatatgaaggtccaaccagaccgcttcaaacccaacagtaccagt
tatggattggaggaagttccagggttcgacctgatggaatacttcaaagtggaaaacata
ctgggaccaaggtttgatgagggccaaagctcctatgttcgactagggaccatgcctatt
gtacaacagacagaagatgtgttccctcaaggtctgccagatgaatatgcttttgtgacg
actttcaagttcaggaagacctcgagacgagaggactggtacctctggcagatctttgac
aagtatggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aatgcagtggggctgaccaaagacgcagtgagagctgtgttcaagaacgaggaggtggac
aacctgttcgacaggaactggcacaaaattgccctgagcgtcgaggccaaggctgtgtct
ctctacctggactgcaaactcattcagaccctgcccatcggggacagggaggacattgat
atccacgggaagactgtgatcgggaagaggctgtacgacagcgtgcccattgattttgac
cttcagagaatgatcatctactgtgactccaaacacgctgagctggagacctgctgtgat
ctgcccaccgggccgtgccccaagaaggtggtgacggaggcccctcccatagagattccc
acccccacccctgcaagggaggagcagcagagaggaccccaggcggtcaattgctcatgt
cccgctggagagaggggagagatcggtgtacctggcgttgccgggcccaagggtgaaaag
ggtgatactggtgctctgggagcggctggaccttctggcctcaagggagccagaggagaa
actggcaaagtaatatctgtcaagggagacagaggtgagaagggtgatcccgggagacgg
gggacatccggcgatgaaggatccaaaggggagaagggaaccagtggagcggcaggtctt
gctgggatagatggatcgaaaggagaaagaggtgaatctgggctggcaggcgatcaggga
ttacctggacctctgggaccaaagggaattgaaggagactcgggacttcctggttcatct
ggacccaaaggtgtcggtggtgaaaaaggtttgaaaggagataaaggatcaggaggatta
aggggtgccaaaggtattgacggattccctggaaaacctggtgttcctggaaaagatggt
ttgggaggactgactggtgcacctggagccgctggagtgaaaggggaaaagggagagatg
ggccctgctggaatgcctggggatatggttcaaagcgagggcttgaaaggagtggatgga
cctccaggacctcgtggccctccagggcctgacggccccccaggaccccctggtgcacct
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaagaaaggtgaa
agtggattacctggtgtcgatgggctacccggacctccgggtccccaggggcctcctgga
gggcaaggaaaccctggaaaaaccggacctcctggtctacctggtgagattggattttca
gggaaactaggagagcctggcaaagctggtttacctggaaacgatggtctggacggagtt
ccaggaaatgacggagacaaggggcctagaggagagtctggattggatggcttccctggt
aaacctggtcctaagggtgaagaaggaacacctgggccaagaggacctggaggagagagt
ggaccagttggattaactggacaaccaggggtcgttggaccaagaggagagaaaggagga
cagggtgacaggggacaagatggctctttcgggccaaagggggacaaaggtgacaagggt
gacacaggacccaagggaactccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaaatcctggagcgagaggagaaaagggagagcaggggaatccagga
gagattggtcaacgaggactgcctggtgaaccaggctttaaaggactggctggaccacag
ggccctaaaggagacatcggccctaaaggagagactgggagacaaggagaccctggtcct
ccaggattgcagggtacgcagggcacccgtggactgcctggcaatgtgggcatccctgga
acccttggaccacctggaatagctggacagagaggagagaggggagatttggggaaggag
ggtcgtgctggccccccaggtccccctggagatgcaggcatacaaggaccccctggccta
ccagggaagggcaaagaaggacagaacggtgatcctgggcagcggggaattgaaggacct
cccggacagaagggccaacccggatcccagggacttcagggggttccaggggacaggggt
ccaccaggagaaggcaaagtcggaccctcgggaccttcagggcccaatggtgcagttgga
tcaccgggcatgagaggtctgccaggcgtcgcaggtacacagggacctgcaggacaccat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcagatgtgaatctgaaggacgtgtgttcagagtgcccggccggacccccgggacag
actggtctcccagggacaccaggagacaagggacctgccggacctccagggaagaacgga
caggacgggtaccaaggccaagcaggcccgaccggaaccactggacccccaggagccaac
ggagagaagggtgtgaaaggtgatagaggaccccaaggaggacctggagacaaaggtgaa
acaggtcacaccggaccccctggccaccccggtgctgctggcatcatggggaatcctggt
aacgacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggaaaggag
gggatgaagggaatccaggggccaccaggtctaccaggcttaatgggtcaaatgggtaaa
attggcaaagatggccgaccaggagaacaaggagaacctggtaaacaaggagagacagga
ccaccaggacaacaaggtctcaggggaatgcctggcttcaagggtcacagaggagagcct
ggacaaccaggttcaaagggtgaagatggaaaggaaggacgtaacggaccggagggtaaa
cctggccaagacggtaataatggacctcctggtccagaaggcctggctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagccaggagcccctggtactcca
ggtcaggctggagccaagggagaccctgggaacccaggattaccaggctttagtggtccc
aagggaccgtcgggtcctgctggtccggtcggcccagaggggaaacagggtatgtctggc
agagcaggagaacgtggagtcaaaggagagaggggcgactcaggtgggaagggagataag
ggacctgttggagatccaggtatgcctggtaaccaggggctcccaggtcgtaagggccac
acagggatgatgggtatgtccgggcccccaggagaggtgggtcttacagggcctcatgga
acacctggaaaccccggacaaccaggaccacggggagagtcaccatcactggaaacaatg
agaaggctgatccaggaggaactagcgaaagcgctagatgccaaaatggcgtacctgatg
gcccagatccagccggcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcggggaaagaagggagcgacggtcgccccggaccaccaggggagcctggcatgcctggg
cagaacggaggagacggcatgaggggacccatgggtcctaaaggtgagagaggatccaga
ggagacaagggagaaaacggagttggacagagaggagagactggaccatcaggtcctata
ggaccagcaggtatgccaggctatggtaaggacgggcagcccggggcggctggagctcag
ggagaaccagggaaccctggtccccatggtcaggcaggccccagtggacccccagggcag
tgtgacccctcccagtgtgcctactatgccagcctgggagcacgaccccacaccaagaac
gtcaaggggaattaa
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