Oncorhynchus masou masou (cherry salmon): 135550017
Help
Entry
135550017 CDS
T10723
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135550017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135550017
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135550017
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135550017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
135550017
NCBI-ProteinID:
XP_064836516
LinkDB
All DBs
Position
12:complement(37774455..37791675)
Genome browser
AA seq
944 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSSATYTTENSED
DKKRGRSTDSEVGQLCCTRSGFEVMPFIKFQSPIKNGNPSSSLSSSSSSSSSSSSASSGA
SSSSLATIAGVGLPVTGGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNSVISSNSN
PSNNILLPSPSASSPANSSIALPPLTPNAQLHAPSRPSPSSSLGLGLGLGLGKGGITGSP
AVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSVSSSSPNSST
VGPVGGNTVSDRSTGLLGSAPCAIGVSGGILSLSGLGSGQLAVQGPPLVASSPIGGLSPG
SSLGAIGSIGGNSGSGAPSSSVGMGGGSTAITRPPSGQKQNGSTSYSAVVADSTPDSALN
SASQLQSSQPSSLTSTTNQPKDSGPSLLGPMILPTSSPSPSYSESKLPGSGMLNGPLSYT
QTSDSKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAPQQPSLS
EVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFH
HQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRH
EEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcgtactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgtatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgtccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
ggttttgaagtaatgccttttataaaatttcagtctcctatcaagaacggcaacccctct
tcgtcgttgtcctcctcctcttcatcctcctcctcttcatcttctgcctcctcgggagcc
tcctcatcctcgctggcgaccatcgccggggttggcctgcctgtcactgggggcaacagc
ctcctgggcaacatgggaggtctcctctccaactctggcagctacagagacgctacccaa
ctgcagcagcattaccatacccagcaggccagaaactcagtcatctcctccaactccaac
ccttcgaacaacatcctcctccccagcccctccgcttcctcacccgccaactctagcata
gccctccccccactcacgcccaacgcccagttgcatgctccgtcaaggccgtcaccgtcc
tccagcttggggcttgggttgggcttgggccttggtaaaggtggcattacggggtcaccg
gccgtcagccagatgtcgggccttggcttgtcggggatgccggcatccctaaacaccatg
gccgggctcctggcgggctcaacttcggccccctacgccacggcagcagcaggctccgga
accatcggaagccccctagcagggaaaagcgtcagcagtagcagccctaactccagcaca
gtgggaccggtgggcgggaacactgtcagcgacagatccacgggcctgttgggctctgcg
ccctgtgcaattggtgtcagcggtgggatcctcagcctaagtggccttggctcagggcag
ttggcggtccagggccctcccctggtggcctccagtcccataggaggcctgtcccctgga
agcagcctgggagccataggaagcattggagggaactctggttcaggcgcgccaagcagc
agcgtgggcatgggaggaggaagcacggcgatcacaaggccacccagtggacagaagcag
aatggtagcactagttacagtgctgtagtagcagacagcacacccgattccgccctcaat
agtgccagccaattacaaagcagccaaccctcgtctttgacctccaccaccaatcagcct
aaagacagtggccccagcctcttagggcccatgattcttcccaccagctctccctcgccc
tcctacagcgagagtaaacttccaggcagcggtatgctcaacgggccactctcctacaca
cagacctctgacagcaagccccaggagcctctgagcactctaaagtctatggcagaacga
gcggcactgggctcaggaatggagggagagatgcttcctctgcacctcaccacagacatt
ttccccagcactacattgcccccggggcctccctcggccccccaacagccctctctttca
gaggtcagcatccccccatcgctgggcgtgtgcccactcgggcctgtgcccctgtccaaa
gaccagctgtaccagcaggccatgcaggaatcggcatggacgcacatgccccacccctcc
gactcggagaggatcaggcagtacctgatgaggaacccatgtcccaccctgcctttccac
caccaggtgccacccccccactccgactctgtagagttctaccagagactgtccacggag
acactgttcttcatcttctactacctagagggcaccaaggcccagtatctggcagccaag
gccttgaagaagcagtcgtggcggttccacacgaagtacatgatgtggttccagaggcat
gaggagcccaagaccatcacagatgagtttgagcaggggacgtacatttactttgactac
gagaagtggggacaacggaagaaggagggattcacgtttgagtacaggtaccttgaggac
cgagacctccagtga
DBGET
integrated database retrieval system
