Oncorhynchus masou masou (cherry salmon): 135550080
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Entry
135550080 CDS
T10723
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135550080
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135550080
mRNA degradation factors
3'-5' decay
Ski complex
135550080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135550080
NCBI-ProteinID:
XP_064836625
LinkDB
All DBs
Position
12:40425938..40460930
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AA seq
1248 aa
AA seq
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MERIDLPAVGPTDLPISLLEMGCSGRFELITHPHPNDQPLPPQSSLPHGLPPTSVSLETE
VEKRFLLDPAWLPIHDTDAAFHSFLKLAERDVHKDSLLHCALSPLHSGISVVRDPTTGML
LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKKKSE
LEEDIDFEKELLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIIDSQPEAEEKGH
GSGNAPKLPRTNSLEDLGIKDSPSTPGTTSTEKKDGGTTKPAGDQEEKKRWAIPINITSP
CGDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQKH
MTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNGSE
VIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRIKK
KHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYAAIDAKKERTSKH
TQSFGTKNPSQNTTPSQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLASMDLT
SSVEKSEIHSFFQKSLRRLRGGDRQLPQILLIRDLLKRGIGVHHSGILPIMKEVIEMLFS
RGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDAT
GTVIILCKSGVHDMGDLNVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSE
SHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRLTAEALQCAVLGSVN
GLKALSVGRVVVVNNKQHFNALGVILQVSSDSVNRTFIALIICEKGNEEGNGDSPNGSAF
PHLYNTALFTPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQLRFRLDPPG
QAISTATQELLRLAEANPGGMMTLDPVNDFQLKSVDVVEGTMRLRVLQDSLKDFSCIHSP
TFSEQFLRVQERMSVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQLKG
RVASQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLKEGIERV
LAVAQRIGELQRDCGITQTAEEYVGQFKFGLTEVAYCWARGMPFAEIAQLTDVQEGTVVR
CVQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatagatctgcccgcagtgggccccacagacctccctatatccctgctggag
atgggttgctctggcaggtttgagctcatcacacatccacatcccaatgaccagcccctg
cctccacaaagttcgctccctcatggactccctcccactagtgtgagcctggagacagag
gtagagaagcgctttctactcgaccctgcctggcttcccattcacgataccgacgctgcc
ttccatagttttctgaagctggctgagagagatgttcataaagactctcttctccattgt
gctctgtctcctctgcactctggcatctcagtagtcagagatccaacaacaggaatgttg
ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattctatgtcc
ctgcaacgtccaccaaaccctaatccctctgagagcctacgaggaagcaacaccaactac
ccgtttttgcccggtggtatggaggagctgacactggaacaaatcaagaagaaatccgag
ctggaggaggacatagactttgagaaagagttactcacagtgccccctggactgaaagtt
gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc
ctcctgtccacctttgatgacatcatagactcccagcctgaggcagaggagaagggccac
ggaagtggaaatgcacccaaactgcctagaaccaacagcctggaagacctggggatcaag
gactctccctctacacctgggaccacctctacagagaagaaagatggaggaacgaccaaa
ccagcaggggaccaggaggagaagaagagatgggcaatcccaataaacatcacctccccc
tgcggtgacttctacaaacgtatccctaaccctgcgttcaagtatccctttgagttggat
gtgttccagaagcaggcagtattgaggctggaggcccatgagtctgtgttcgtggcagct
cacacatcagcaggcaaaaccgtggtggcagaatacgccatagcactctcacagaagcac
atgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttccgggac
ttcaagaccacctttggggacgtggggctgctgaccggggacgtccagctgagtcctgaa
gcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggttcggag
gtcatcagagatttagagtgggtgatctttgacgaggttcactacatcaatgatgctgag
agaggagtggtgtgggaggaggttctgatcatgttacctgaccacgtcagcattattctt
ctgagtgccactgtccccaacgctgtggagttcagtgagtggatcgggcgcattaaaaag
aagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactacctgtac
acaggcaacagcaccaagacccaaaaggagatgttcctactgctggaccctacgggcaac
ttccaaaccaaagggtactacgctgctatagatgccaaaaaggaacgcaccagtaaacac
acacagtcttttgggacgaaaaatccatctcagaacactacacctagtcaggaccgggca
gtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtggtggcgttc
accttctccagaacgcgctgcgacgacaacgcccgctctttagcctccatggacctcacc
agctcagtggagaagagcgagatccactcctttttccagaagagcctgagacgcctcagg
ggaggggaccgccagctgccccagatcctgttgataagggacctactgaagaggggtatc
ggtgtgcatcacagtggcatcctgccaatcatgaaggaggtcattgagatgctgttctcg
cgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaacatgcct
gcgaggacagtggtgtttgacagcatacggaaacacgatggcaccggcttcagaaacctt
ctgcctggtgagtatatccagatggctggtagagcgggtaggagaggtctggatgccaca
ggcactgtcatcatcctctgcaagtcaggggtacatgacatgggggacctaaatgtcatg
atgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatgatcctc
aacctgctgcgtgtggaggccctccgagtcaccgacatgatgaggaggagcttctctgag
agccacagagacacacaggcccatgagcagcagattggtcagttgaaacagactctgtcc
tctctccctcctctggacacggagggtcagctgtctgacctactgccgtactactacact
gtcactgagctacgcctcactgctgaggcgctgcagtgtgctgttctggggtctgtgaat
gggttgaaagcgctctccgtgggacgagtggtagtggtcaacaacaaacagcacttcaac
gccctcggagtcatcctacaggtttccagtgactcagtgaatcgtacgtttattgctctc
atcatctgtgagaaaggcaatgaggagggaaacggggacagccccaacggcagtgccttc
ccccacctctacaacactgccctctttacacctgaaggtccctgcagtcacacggtccag
aagctgaagctacaggacatctcagccatcacagtcaagaccctgaaggtgatccctgac
cgaatcatcgacaactacaacaagaggcagcagctgcgcttcaggcttgatcctccgggt
caagccatttccacggcaacccaggaactcctgcgattggcggaggccaacccaggcggg
atgatgacccttgacccagtgaacgacttccagctgaagagtgtggatgtggtggagggc
accatgaggctgcgtgtgctgcaggacagcctgaaggacttcagctgcatccactcaccc
accttctcagaacagtttctgcgggtgcaggagagaatgagtgttcaggaggaactggac
aaactgctcttccttatctcagaccagtccctgtctctactgccagagtaccaccagaga
atcaaggtgctccaatccctgcagtacgtggacagtagtggtgcggtgcagctgaagggc
agggtggccagtcagatcagtagccatgagctgcttctcacagagctactgtttgagaac
gccctgagccctctggcccctgaagagagcgccgccctactgtcctgtctggtctttcaa
cagaagacccaggtggagcctcacataaccaacacactgaaggagggtattgagagagtg
ctggcggtggcccagcgtattggggagctgcagagggactgtgggataacccagacagcg
gaagaatatgtgggccagttcaagtttggcctgaccgaggtggcctactgctgggccaga
ggcatgccatttgcagagattgcccagttaacagatgtccaggagggtacggtggtgcgc
tgcgtccagagactagacgaggtgctgaaggaggtgcgccaggccgcccgcatcgtggga
gactcggtcctgggcagcaagatggagaaggcctccctggccatccgcagagacatcgtg
ttcactgcctcgctctacacacactga
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