Oncorhynchus masou masou (cherry salmon): 135550591
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Entry
135550591 CDS
T10723
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135550591
09122 Translation
03013 Nucleocytoplasmic transport
135550591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135550591
03041 Spliceosome [BR:
omm03041
]
135550591
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135550591
Spliceosome [BR:
omm03041
]
Complex C
Other components
EJC/TREX
135550591
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135550591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
135550591
NCBI-ProteinID:
XP_064837610
LinkDB
All DBs
Position
12:61938296..62000910
Genome browser
AA seq
1587 aa
AA seq
DB search
MCSILGKMATLILPADWIKNWEKSGKHDFVQLCKNLADKTNHDSIIKDIQAALYELCWHV
VQGNFKLDLAASVLSDMMELRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLL
FVPDAILKERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLI
TELGQDLSGNITSHVVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYM
CEPLTLCHILGFKFKFNQEPNEETPTSLYHIAAALLHHKLIELEDLYVHLMPLDASIVEE
HKREITEAKQIARKLTMVVVPSEKMEDKEREKEKEEEKNDKPPDNQKLGLLEALLRIGDW
HHAQSIMDQMPAFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCVMRPLRNKRAP
RPAESFEDLRRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQNEARNDHIKDKMDT
LLSCFLSIADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLL
VKVKAQTVDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVV
DSLKYLTSLNYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELA
GLLQYVTNTLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQ
IRNTKKSSQRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLV
QFGGFLASNLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEK
SNRQQQKVHKYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNA
YDREVKKLQVQVKTIEENPDVPMNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKL
EKDNWLLAKSTKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYD
RVFSDIIYTVASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATG
FDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVL
NLGQALECRVHKICLEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATT
ASQLNGPGTTAKPATNASKTEEGACEDADRSKDKSQGAAKPVNKANSTVAKVTTSNGNGA
PNSTKAIKERDDKEKSGKEKKEKKEKTPGSTPETKGESRREKQRDERGAAGKEERAPREG
KEKTPKADRDKQKAEEKSNKEDNKAKAGNGEPKELSRERDTGAKESKTKEKGGDQSKEKG
GDRSAVSGSLKSPVPRSESAESERDHKRRKVDTHSSPSHSSSVKDNSNEPKDSASKHHIT
YNSVSRSKSRERETDQKESENTRGRSKEKKTEDKDRKDRKRDHMTTDREMSLESKRRKDE
NGTNSSNKHSKSASPSSDSPVSADKEKTKRSKSSSKEKGESTKPEKNSSGGKKESRHDKD
KPDKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagtattttggggaagatggcgacacttatcctgcctgctgattggatcaaaaac
tgggaaaaatctggaaaacacgactttgtacaactatgtaagaatcttgcagacaaaacc
aatcatgacagcataataaaagatatacaggctgctttgtatgaactctgctggcatgtc
gtacaagggaacttcaagctggacctcgctgctagcgtcctcagtgacatgatggaactg
cgcgatgacatgccatccattttagcagatgttttcagtatactggacatagagaccagt
tctttggaggaaaaaaacaaacgcgaccattacacccagctagtgggagcatgtctgtta
tttgtgccagatgccatcctgaaggagagactggacccagagacactggagtccctagga
ctcataaagcaagcccatcagttcaaccagaaaatcgtcaaaatcaagaccaagctattt
tacaagcagcagaagttcaacttgctaagggaagagaatgagggctatgccaagctgatc
actgagctgggccaagacctctcaggcaacatcactagccacgtcgtcctagagagcatc
aagtccctgataggatgcttcaacctggaccccaaccgcgttctggacatcatcctggag
gtgtacgagtgtcgctctgaccaggatgagttcttcctgcccctcatcaagtcctacatg
tgtgaacccctcaccctctgccacatcctgggcttcaagttcaagttcaaccaggagcct
aatgaagagacccctacttcactctaccacattgctgccgccctcctccaccacaaactc
atagagctggaggacctctatgtgcatctgatgccactggatgccagcattgtagaggag
cacaagagagagatcacggaggccaagcagatcgcccgcaagctcaccatggtggtggtg
ccctccgagaagatggaggacaaggagagagagaaggagaaagaggaggagaagaacgac
aagcctcctgataaccagaagctgggcctgctggaagcgctgctgaggatcggagactgg
catcatgcccagagcattatggaccagatgcctgccttctacgccacctctcacaaggcc
atcgccctggcactgtgccagctgctgcacctgactgtggagccgctgtaccgcagagcc
ggggttcccaaaggggctaagggctgtgtgatgaggcccctgaggaacaagcgggcccca
aggcctgccgagagctttgaggacttacgcagagacgtgttcagcatgctctgctacctg
gggcctcacctctcccacgaccccatcctctttgccaagatagtacgactgggcaagggc
ttcatgaaagagtaccaaaatgaggctagaaatgaccacatcaaggacaaaatggacacg
ttgctgagttgtttcctgagcattgcagaccaggtgctgctgccctcgctctctctaatg
gagtgtaacgcctgtatgtcagaagaactctggggcctcttcaaactgttcccttaccag
cacaggtaccggctatacgggcagtggaagaacgagacgtacaccagccacccactgctg
gtcaaggtcaaagctcagactgtggacagagctaaatacatcatgaagcgattgaccaaa
gagaatgtgaaaccatctgggcggcagataggcaagctgagccatagcaaccccaccatc
ctctttgactatatcctgtctcagatccagtggtatgacaacctcatcggtccagtggta
gactccctcaagtacctcacctcactcaactatgatgtcatggcctattgcattattgaa
gcgctggccaatccagagaaagagaagatgaaacatgacgacactacgatatcctcctgg
cttcagagcctggctagtctgtgtggagctgttttcaggaaatacccaatcgagttggcc
ggcctcctccagtatgtgaccaatacgctgaaagcagggaagagttttgacctgctgatt
ctaaaagaggtggtgcagaagatggccggcatcgagatcacggatgagatgacatcagag
cagatggaggctatgactggaggggagcagctcaaagctgagggtggttactttggtcag
atccgtaacactaagaagtcgtcccagcgtctaaaggatgccctgttggaccatgagctg
gctctacccctctgtctcctcatggcccagcaacgcaacggggtggtctttctagagggg
ggcgagaaacacctcaaactggtgggaaagctctacgaccagtgtcacgacaccctggtc
cagtttggtggcttcctggcgtccaacctgagtactgaggactacatcaagcgtgttccc
tccattgacatcctgtgcaaccagttccacaccccccacgatgctgccttcttcctctca
cgcccaatgtacggacatcagatcctgtctaagtatgatgagctgaagaaagctgagaag
agcaaccggcagcagcagaaggtccataagtacgtggctgcgtgcgagctggtgatgtcg
ccggtgcatgaggctgtggtgtccctgcacccgccccgcgtctgggacgacctccgaccc
cagttctatgccaccttctggtcgctgaccatgtacgacctggccgtgccacacaacgct
tacgaccgcgaggtgaagaagctccaggtccaggtcaagaccatcgaggagaaccctgat
gtgcccatgaacaagaagaaaaaggagaaggagcgctgcacggctctacaggacaagctg
caggaggaggagaagaagcagctggagcacgtccagagggtcctgcaccgcctcaaactg
gagaaagacaactggctcctcgccaaatccaccaagaatgagaccatcactaagttcctg
caactgtgtctgttccctcgctgtatcttctctgccatcgacgctgtgtactgcgcccgc
tttgtggagctggtgcaccagcagaagacccccaacttctgcaccctgctctgctatgac
cgggtgttctctgacatcatctacacggtggccagctgcacagagaacgagtcgcggcgc
tacggacgtttcctgtgctgcatgctggagactgtgacccgctggcacagcgaccgtgct
gtctacgagaaggagtgtggtaactacccaggcttcctgaccatcttcagagccacaggc
ttcgacggagggaacaaagccgaccagctggactatgagaacttcagacacgtggtgcac
aaatggcactacaagctgactaaagcatcagtccactgcttggagacgggggagtacacc
cacatccggaacatcctcatcgtgctgaccaagatcctgccttgttaccccaaagtgctg
aacctgggccaggcgctggagtgccgcgtccacaagatctgtctggaggagaaggagaag
aggccagacctctatgccttggctatgggctattctggccagttgaaaggcaggaaagtg
cacatggtccctgagaatgagttccaccacaaggagcagccggtgcgtagcgccaccact
gccagccagctgaacggccctggcaccacagccaagcctgccaccaacgccagcaagacg
gaggagggagcctgcgaggacgctgaccgatccaaggataaatctcagggggcggcaaag
ccagtgaacaaagccaacagcacagtggccaaagtgaccaccagcaatgggaatggtgct
cctaacagcaccaaagccatcaaagagagggatgacaaagaaaagagtgggaaggagaaa
aaagagaagaaggagaagactccaggcagcactccagagacgaagggggagagccggcgg
gagaagcagagggacgagagaggagcagccggcaaggaggagcgggcgccacgcgagggt
aaggagaagacccccaaggcagacagggacaagcagaaggcggaggagaagagcaacaaa
gaggacaacaaggccaaagccggcaacggagagcccaaggagctgtccagggagcgcgac
actggagccaaggagtccaagactaaggagaagggaggagaccagagtaaggagaaggga
ggagacaggagtgctgtgtccgggtccctcaagtctccagttccccgatctgaatctgct
gaatctgagagggatcacaaaaggcgaaaagtcgatacccactcttcaccatcccactct
tcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcaccacatcacc
tacaattcggtctcgcggtccaagagcagagagagggagacggaccagaaagagtcagag
aatacccggggccgttccaaagagaagaagaccgaagacaaagaccgaaaggacaggaag
agagaccatatgaccactgaccgtgagatgagcctagaatccaaacgcagaaaagatgaa
aatggaaccaattcctccaacaaacacagcaagagcgccagtccctcctcagactcaccg
gtctcggctgacaaagagaagaccaagaggtccaagtcatccagcaaggaaaagggagag
tctactaaacctgagaaaaactcttccgggggcaagaaggagtctaggcatgacaaagac
aaacctgacaagaaggagaagagggacagcagcggcggaaaggaagagaaaaaacatcat
aagtcctccgacaagcacagataa
DBGET
integrated database retrieval system
