Oncorhynchus masou masou (cherry salmon): 135550649
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Entry
135550649 CDS
T10723
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135550649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135550649
03036 Chromosome and associated proteins [BR:
omm03036
]
135550649
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
135550649
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
135550649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
135550649
NCBI-ProteinID:
XP_064837726
LinkDB
All DBs
Position
12:complement(63867518..63894301)
Genome browser
AA seq
1800 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGAANNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAPSGTATSLFGSTSTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASTSLFGASGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGLFGPAAAATPSTGTTGLFGSSATNTGFSFGQAKTSFGTSAGGFGAATGSLFGQQQ
PQQVQQAVSLFKPFGQATTTPNTGFSFGSTMGQPQQTSTMGGLFGATAASQAGGLFGNTA
QTAPATGFGTGTGLFGQTNTAFGNVGTQQGLFGNKTAGFGVTTTSAPSFGTGTGLFGNKP
ALSLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGTGLGASFGAVGTGQMSLFGNNKTLG
STLGTMGGFGVQGFSTGNSTLGFGVPQQPVAVTDPNAVAAQQAVLQQQINALAYSPFGDS
PLFRNPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSNSQLF
DGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGAS
VDEDDVREVVEGGCENDLEIKFYTKPNLQDTISELNAHRMGAGGRNGLEVSSEDISLGDD
SIQEERVEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVFFH
GEVNVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQIK
SPERLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEEVPLKL
DPKKLKTATRLPPGLLQLPPSQQQVAPQAQSTAVLELLNCMLEVDSDMADITQDAPEESM
LGEKGSRLGNVTPSEHDSVSASSQIASSLGINPHTLQIMKASLFAEADDGDMFQEQGGMT
SSLDVASPRIHLPGTQGRPSIGGLLQTRFSGAGLFQHPDVPFGGGLPDRLSMSRVSPAVP
EPSRVSPWPSLLAPPAKSTVRTVGARQLGGPVDPENSVTLGKGRLLMDAALFTGRSFRVG
WGPGWTLVHCGDGLSGAGDKEQDHGDTGAAGFGFLSKPAKSRLLSDSPFKVVIEQVVGLE
PRNIEKSQAVYQRPLEISLKHSSISTEGACPFIQPQSGVAALHEYAEWITDLNQEAGAGD
AVLGHWAQVWTLCEALWGRRCSAGPGTSGYLQQMERRRSFSAWLSHSATQRIEQEVSLNQ
GGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGRELLALQLGDWNRMQ
TDSFLLEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLWYMLPPTASIAEALV
KYEAAFQGSAKGQKYACAPLPPYLDQSDQLDMEEDDSKQPLYDICFYLLKLYSDRHYSLQ
QLLDPLAVTWDRLDYRLNWHLWSVLQALHYTHLSLARQGLIHTSYAAQLESAGLWDMAIY
VLLHIPDNTLRERAVREMLQLHCPLLETEESAKKEHFLTERLLIPEQWLNQAKATRARRD
TDRHGEALHLYRAGHWNLCHSLVIQHLASDCIINDNHEYLLKFLEGLAVPERSAVIQDWD
TAGRVYLDYIRVVQTLHAIQQMDSTGNELECLHTEVRSLCSRIEFLPCSTAKDRLAQSEM
AKCVANILRVVLSLQQGGEGGEIPLSQLASNIGHLPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacgtca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcggccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcctgtgacatcatccaccagtagcggctttggctttggtgcg
cccagcggcaccgccaccagcctgttcggcagcaccagcacgggcggcggcggaggactc
ttctcccagcagagcaatgccttcggcgccgccaagccagcctcttttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcaaccaactccaaccctttcggaggg
gcgtctacctccctgtttggagcatcagggtttacccagcaggctgcccagccaggcacc
accgtcaagttcaaccctccaacaggaagtgataccatggtgaaagggggtgtgacgaca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaataaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacaggcggtctctttgggcctgcagccgcagccacccccagtacggggactaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctcc
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggtccagcaggcagtcagcctgttcaagcccttcggccaggccacgaccacc
cccaacacaggcttctccttcggcagcaccatgggccagccccaacaaaccagcaccatg
gggggtctgtttggggccacggcagcgtcccaggcaggggggttgtttggaaacaccgct
cagactgcaccagctacgggctttgggacaggcaccggactctttggacaaaccaacacc
gcgttcggcaacgtcggcacacagcagggcttgtttggtaataaaacggcagggtttggt
gtcaccaccaccagcgccccgtcgtttggcacgggcaccggcctcttcggcaacaaacct
gccctctctctcggaacagctaccaacacatccaactttggttttggacccactgctgct
ggtggaagcctttttgggaacaagactgcagcaggaggactagggaccgggctgggagcc
agctttggagcagtaggcactggtcagatgtctctgtttgggaataacaagaccctgggt
tccactctgggaacaatgggaggttttggagtgcagggattcagcacaggaaacagcact
ctgggcttcggagtgcctcaacagcccgttgcggtgacggaccctaacgcggtggcggcc
cagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcggagactcc
cccctcttcagaaaccccctctctgatcccaagaagaaggaggagcgtctgaagcccacc
aatccggtggcccagaaggcgttgaccacaccaactcactacaaactgacaccgcgacct
gcgacacgtgtgcggcccaaagctctgacatcatcgggctcctccaattcccagctgttt
gatgggttggatgacgacgagccttctctcaccaacggtgccttcatgcccaggaagagc
atcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagcccaatcaac
agagactccgacgacctgtcttctccaccagagtaccccctcaacggactcggtgccagt
gtggacgaggatgatgtgagggaggtggtggagggaggatgcgagaacgacctggagatc
aagttctacaccaagcccaacctacaggacaccatctcagagctcaatgcccataggatg
ggggctgggggcaggaacgggcttgaggtgagcagcgaggacatatcgctgggagatgac
tccatacaggaggagcgagtggagggccccccccaccctgcaggtatcgttctgggccgt
gtgggctactacaccatccctgccatggacgagctggccaaaatggtggacgaaaacggg
gtgtgtgtggtggaaaacttcaccgtgggcagaaaaggttacggctctgtgttcttccat
ggtgaggtgaacgtgactgggctgaacctggatgagattgtccacttcagacgtaaagag
gtcatcgtctaccttgacgacaagaacaagcccgctgagggggaggggctcaacaggcga
gcagaggtgactctggatggggtgtggcctaatgataagaccacctgtactcaaataaag
agccctgagcgtctgtctgagatgaactacgagggccgcctggagaatgcctcacgcaaa
cagggcgcccgcttcctcgagtaccgctccgagacggggtcctgggtgtttgaggtggcc
catttctctaagtacggcctgcaggactctgacgaggatgaggaagtccctctcaaattg
gaccccaagaagctgaagactgcaacaagacttccaccagggctgctgcagctgcctccc
tcccagcagcaggtggcaccacaggctcagtccacagcagtgctggagctgctgaattgc
atgttggaggtggacagtgatatggccgacattacccaggatgccccagaggagagcatg
ttgggggagaagggaagtcggctggggaatgtgaccccttcggaacacgactctgtctca
gcgtccagtcagatcgcctcctcgctggggatcaaccctcacacactacagattatgaag
gcatccctgtttgctgaggccgatgatggtgacatgttccaggagcagggagggatgaca
agttctctagatgtggcctctcctcgcatccacctgcctggcacgcagggcaggccctcc
atcggtggtctcctgcagactcgtttcagcggtgccggtctctttcagcaccctgacgtg
cccttcggtgggggccttcccgacaggctgtccatgtctcgggtgtcgccggcggtgcct
gagccttcgcgggtctccccctggccctctttgctagcccctccggccaagtccactgta
cggacagtaggggctcggcagctggggggacctgtggacccagagaactcagtcacactg
gggaagggccggcttctgatggatgcggctttgttcacgggccggtcatttcgggtgggc
tggggtcctggctggactctggtccactgtggagacgggctaagtggggccggggacaag
gagcaggaccacggagacacaggagctgcaggctttggattcctgtccaaacctgccaag
agtagactactgtcagacagtccattcaaggtggtgattgagcaggtggttggtctggag
ccgcggaacattgaaaagagccaagcggtgtaccagcggcccctggagatcagcctgaag
cacagcagcatcagtacagagggggcctgccccttcatccagccccagagcggtgtggcc
gccctgcacgagtacgcagagtggattactgacctcaaccaggaggctggtgctggagat
gcagtcctgggtcactgggctcaggtgtggactctgtgtgaggccctgtggggccgacgg
tgttcggcagggcctggtaccagtggctacctgcagcagatggagaggagaaggagcttc
tcagcctggctgtcccacagtgccacccagaggatcgagcaggaagtgagcctgaaccag
gggggaggaaacgtggaggccatctttagctacctgacaggacaccggatcagtgacgcc
tgcaggctggctcagaagagtggggaccaccgtctctccctgctgctgtcccaggcggtg
ggatctcagtacggccgggagctgctggcactgcagcttggagactggaacaggatgcag
acagactctttcctgctggaggagaggttacggatctttgcccttctcgctgggaaacct
gtgtggcagtctacagactgtgtggtgaatgtgtgttcagaactggactggaagcgttgt
atggctgtccacctgtggtacatgctgcctcctaccgcctccattgctgaagccctggtg
aagtacgaggctgccttccagggctctgccaagggtcagaagtatgcctgcgcccccctt
cccccctacctcgaccaatcagaccagctggacatggaggaggatgattctaaacagccg
ctttatgatatctgcttctacctcctcaaactctacagtgacagacactacagcctgcag
cagttgttggaccccctggcggtgacgtgggatcgtcttgactaccgtctgaactggcac
ctgtggtcggtcctgcaggcgctgcactacacacacctcagcctggcccgacagggcctc
atacacaccagctatgctgcccaactggagagtgctggcctctgggacatggccatctac
gtactgctgcacatacctgacaacacgctgcgtgagcgggcggtgagggagatgctgcag
ctgcactgccccctgctggagacggaggagtctgccaagaaagagcactttctcacagag
agactactgatcccagaacagtggctcaaccaggccaaagctaccagagccagaagagac
acagacagacacggagaggcccttcacctgtacagagcaggacactggaacctctgccac
agtctggtcatacagcaccttgcctcagattgcatcattaatgataatcatgagtacctc
ttgaagttcctggaggggcttgcagttcctgagcgcagtgctgtgatccaggactgggat
acggcgggcagagtctacctggactacatcagagtcgtacagaccctacatgccatacaa
cagatggacagtactggtaatgagctggagtgtctacacactgaggtgaggtcactctgc
agcaggatagagttcctcccttgctccaccgccaaggaccgcctcgcccaatcagagatg
gccaagtgtgtggctaacatcctgcgtgtggtgttgagtctgcagcagggtggtgagggt
ggcgagatccccttgtcccagcttgcgtccaacatcggccatctgcccatgcccgaggac
tatgctctcgaggagctccgcagtctcacccaatcatatctgagacagctcattgtcagc
taa
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