Oncorhynchus masou masou (cherry salmon): 135550925
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Entry
135550925 CDS
T10723
Symbol
smfn
Name
(RefSeq) small fragment nuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135550925 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135550925 (smfn)
03009 Ribosome biogenesis [BR:
omm03009
]
135550925 (smfn)
Messenger RNA biogenesis [BR:
omm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
135550925 (smfn)
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-60S particles
RNases
135550925 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
135550925
NCBI-ProteinID:
XP_064838240
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Position
12:81347614..81366698
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AA seq
287 aa
AA seq
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MPAFLCTRASAWSFSSKLLCKFANFPTLRPSSSQRFSASRHLFLQSSTSLNCAISEQRKG
LAPRRTGLNIFVHNISTYRKKMSSSRSDPGMRQRMVWVDLEMTGLDIEKDQIIEMACLIT
DSELNVLAEGPNLIINTTGELLDGMDNWCKEHHGNSGLTQAVRDSKISLQQAEYEFLSFI
RQHTPPGHCPLAGNSVHADKKFLDKYMPQFMHHLHYRIIDVSTIKELCRRWFPEEYKLAP
QKKASHRALGDIQESIKELHFYRAHVFKSQTEEKKRKILQNCDGNSV
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgttcttgtgcactcgagcatcagcgtggtctttcagctcgaaacttctttgc
aagtttgcgaattttcctactcttcgcccaagcagcagtcaaaggttttcagcaagtcga
catttatttttgcagtcaagcacaagtctgaactgcgctatttctgagcagaggaaaggc
ctagcgccaagacggaccgggctgaatatttttgtacataatatctccacataccgcaag
aaaatgtcatcttcgcgatcagaccctggcatgaggcagaggatggtgtgggtggacttg
gagatgacaggactggacatagagaaggaccagatcattgagatggcgtgcctcataaca
gattcagaattaaatgttttagctgagggtcccaatttgataatcaacacaaccggcgaa
ctgctggatgggatggacaactggtgtaaagaacatcatggcaattctgggttgacacag
gcagtgagggacagtaagatctcgctgcagcaggctgagtacgagttcctctctttcatc
agacagcacaccccacctggccactgtccccttgcagggaactctgtgcatgcggataag
aagttcctggacaagtacatgccccagttcatgcaccatctccactacaggatcatcgac
gtgagcacgatcaaggagctctgcagacggtggtttccagaagaatacaagcttgcacca
cagaagaaagcgtctcacagagcactgggcgatattcaggagagcatcaaggaactgcac
ttctacagagcacatgttttcaaatcgcagacagaggaaaagaagcgcaagatattgcaa
aattgcgacggcaacagtgtttga
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