Oncorhynchus masou masou (cherry salmon): 135550953
Help
Entry
135550953 CDS
T10723
Name
(RefSeq) interferon regulatory factor 1-like isoform X1
KO
K09444
interferon regulatory factor 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
135550953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135550953
Transcription factors [BR:
omm03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
135550953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
135550953
NCBI-ProteinID:
XP_064838321
LinkDB
All DBs
Position
12:83897737..83902212
Genome browser
AA seq
335 aa
AA seq
DB search
MPVSRMRMRPWLEDKIETNSISGLVWVDKDKKIFSIPWKHAARHGWDLNKDACLFKQWAM
HTGKFIQGETTPDPKTWKANFRCAMNSLPDIKEVKDKSINRGSGAVRVYKMLNVSTKPNN
KRSKAKDAKKNDKGLKIKTEEMDNSATHCLEDRNTNTHLQEDRKIQENKVDSSDNRGETI
TAASYLDGSVNDPDVPDFITSVEIGPDSINYYSSFQVSPDHSTDYEDLNEETLIEIAQHW
EQLDQLELPGSVNSKGFLSNEVATVESYNTAESNHSPESQWSDNSGSEIELRLYTELSPG
LPMAEDLVSYVDHWALNNTLNNNTTSYLQQISCPL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtctaggatgagaatgaggccttggctggaggataagattgagaccaactcc
atcagtggattggtgtgggtggacaaggacaagaagatattctccatcccatggaagcat
gctgcacgtcatggatgggacctgaacaaggatgcctgtctattcaagcaatgggccatg
cacacagggaaattcatacaaggcgagactacaccagaccctaagacatggaaggccaat
ttccgctgtgcaatgaactcccttcctgacatcaaggaggtgaaagacaagagcatcaac
agagggtcaggagcggtgcgcgtttacaaaatgctgaacgtcagcacaaagccaaataac
aagaggtcaaaagcaaaggatgcaaagaaaaatgacaaggggttaaagatcaagacagag
gaaatggacaacagtgcaacccattgcctcgaggatcgcaacaccaacacacacctgcag
gaggacagaaagatacaggagaacaaagtcgacagctcagacaaccgaggggagaccatc
acagcagcgtcatatcttgatggctctgtcaatgaccctgatgttccagactttatcacc
tctgtggaaataggaccagacagcatcaactactactcgtctttccaagtgtcaccagat
cactccacagactatgaagatttgaacgaagaaacacttattgagattgcacagcattgg
gagcaattggatcaattggagctgccaggcagtgtaaacagcaaggggttcctgagcaat
gaagtagctacagtagagtcatacaacactgcagagtctaaccacagtccagagagccaa
tggagtgataactcagggtcggaaatagagctgcgtttatacacagaactgagcccaggc
ctaccaatggctgaagatctcgtctcttacgtcgaccattgggctctgaacaacacactg
aacaacaacacgaccagttatctccaacagatctcttgcccactttga
DBGET
integrated database retrieval system
