Oncorhynchus masou masou (cherry salmon): 135551061
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Entry
135551061 CDS
T10723
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135551061 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135551061 (ddx46)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135551061 (ddx46)
Spliceosome [BR:
omm03041
]
Complex A
U2 snRNP components
U2 related factors
135551061 (ddx46)
Complex B
135551061 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
135551061
NCBI-ProteinID:
XP_064838524
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All DBs
Position
12:complement(92101840..92131362)
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AA seq
1065 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDGAASRNRDRDRNRRGERSRSRDRRR
SRSRDRKRPRRSRSREKRRSRSRDRNRRSRSRGRRSQSASPSKSRKTEETLSKSKEKDNP
EASAEKKKIKEEQEEVVEDQDFDQNKLEEEMRKRKERVEKWREDQRKKALGNIEEIKREI
EEMKQGKKWSLEDDDDDDEEGTAPEEEPEEGEEGKGPEEKEEKKEEEEEEEEEEVTPMEQ
EAEDELDTLDAYMEEVKEEVKKFNMGPQSKGNDKKGGVNVSKVVTVCKTKRGPNVHKKKG
ELMENDQDAMEYSSEEEEVDLATALTGYQTKQRKVLEPVDHQKIEYEPYRKDFYVEVPEL
AKMSPEEVNVHRLDLEGIAVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKPTPIQAQA
IPAIMSGRDLIGIAKTGSGKTIAFLLPMYRHIMDQRPLEEAEGPIAVIMTPTRELALQIT
KECKKFSKPLNLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRR
ATYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQ
VGGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKA
SYPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDIKQLILVVNYNCPNHYED
YVHRAGRTGRAGNKGFAYTFITDEQARYAGDIIKALELSGSPVPKELEQLWLSFKNQRQA
EGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIESMFN
SKKRVKDLSAPGGGPPSAAAVAAAAAGGLANLGAPSAGNIQKLEMAKRLALRINAQKNLG
AEAQDVMQQATNAILRGGTIMAPSVSAKTIAEQLAEKINAKLNYIPVEKLEEERQAAEQA
ETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKI
YLAIESANELAVTKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgagtcaaggcattacaggaaacggtcggcatcgaggggacggtccgggagt
cgatcaaagagccgttcgccagacaaacgctccaagaaggatgatggggctgcctcacga
aaccgagacagggaccgcaacaggcggggagagaggtcacgcagccgtgaccgacgccga
tcaaggtccagagacaggaagcgccccagacgctctaggagtcgggagaagaggcgctcc
aggagccgtgacaggaatagaaggtctcgaagccgaggacgcagatctcaatccgcaagc
cccagcaaaagcaggaaaactgaagagactctgtctaaaagcaaggaaaaagacaaccct
gaagcctctgcagagaagaagaaaatcaaagaagagcaagaggaggttgttgaggatcaa
gactttgatcagaacaagctggaggaagagatgaggaagaggaaggagcgagtggagaag
tggagggaggaccaaaggaagaaggccctaggaaacatcgaggagatcaagagggagatt
gaggagatgaagcagggaaagaagtggagtctggaggatgacgacgatgacgacgaggaa
gggacagctcccgaggaagagcctgaagaaggcgaggagggtaaggggccggaggagaag
gaggaaaagaaagaggaggaggaggaggaagaggaggaggaagttactcccatggagcag
gaagcagaggatgagctggataccttagacgcctacatggaggaggtcaaggaggaagtc
aagaagttcaacatgggcccccagtctaaagggaacgacaaaaagggaggagtaaacgta
tccaaagttgtcaccgtatgcaaaactaagaggggtccaaatgtccacaaaaagaagggt
gagctgatggagaatgaccaggatgcaatggagtactcatcagaggaagaggaagtggat
ctggcgacagccctgactggctaccagaccaaacagaggaaggtgctggagccagtggat
caccagaagattgagtacgaaccataccgcaaggacttctatgtagaggtgccagagctg
gccaagatgtctccagaggaggtgaatgtccacaggctggacctggagggtatcgcagtc
aaaggaaagggttgtcccaagcccatcaagtcatgggttcagtgtggcacgtctatgaag
atcctgagtgcactgaagagacacagctatgagaagcccacccccatccaggctcaggcc
attccagccatcatgtctgggagagatctcattggcatcgctaagaccggcagtggaaag
accatcgccttcctccttcccatgtaccgtcacatcatggaccagaggcccctggaggag
gctgagggacccatcgctgtgatcatgactcccactagagagctggctctgcagatcacc
aaggagtgcaagaagttctccaagcctctgaacctgagggtggtgtgtgtatatggaggc
actgggattagtgaacagattgctgagctgaagaggggagcagagatcattgtgtgcaca
ccggggcgaatgattgacatgttaggtgccaacagtggtcgagtcacaaacctgcggcga
gccacgtacgtggtcgtggacgaggcggatagaatgttcgacatgggctttgagccacag
gtgatgcgtatcatggacaacgtgcgtccagaccgtcagacggtcatgttctcagctacg
ttcccgcgggccatggaggcactggccaggaggatactgtccaagcccatcgaggttcag
gtgggaggcaggagcgtggtgtgctctgatgtggagcaacatgtgctggtaattgaggag
gaccagaagttcctgaagctgctagagatccttggccattaccaggagaagggctcggtc
atcatctttgtggacaaacaggagcatgctgacgggctgctcaaagacctgatgaaggcc
tcctacccctgcatgtctctgcacggaggcattgaccagtacgacagagacagcgtcatc
aatgattttaagaacggggcgtgtcggctaatggtggccacctctgtggcagccaggggt
ttggacatcaagcagttgatcctcgtcgtcaactacaactgtcccaaccactacgaggac
tatgtccacagggctggacgtacagggagagccgggaacaaaggctttgcctacaccttc
atcacagatgagcaggcacgctacgccggggacatcatcaaggccctggagctctcaggg
tcccctgtgcccaaggagctggagcagctgtggctgtccttcaaaaaccaacggcaagcg
gagggtaaaagcatcaagagtagcagcgggttctcggggaagggtttcaagtttgacgag
acggagcatgccctggctaacgagaggaagaagctgcagaaggccgctctgggtctgcag
gactctgatgacgaggacggagccctggatattgacgagcagatcgagagcatgttcaac
tccaagaagagggtgaaggatctgtcggctccagggggagggccgcccagtgctgcggcc
gttgcggctgcagcagcggggggcctagccaacctcggtgccccctctgctgggaacatc
cagaaactggagatggccaagagactggctctcaggatcaacgcccagaagaacttgggg
gctgaggctcaggatgtgatgcaacaggccaccaatgccatcctgagaggaggcaccatc
atggccccctccgtctcggcgaagaccatcgccgagcagctggctgagaagatcaacgcc
aagctcaactacatccctgtggagaagctggaggaggagaggcaggcagctgaacaggcc
gagacagtcaagagatacgaagaggagctggaaatcaatgatttccctcagactgcgagg
tggaaggtcacgtctaaggaggccctccagaggatcggagaatactctgaggcagccatc
accatcagaggaacctacttccctccaggcaaagagcccaaagagggagaacgcaagatc
tacctggctattgagagtgcaaatgagcttgcagttacgaaggccaaggctgagatcact
cggctcatcaaggaggagcttatcagattacaaaactcctaccaacccaccagcaaagga
agatacaaggtcttgtag
DBGET
integrated database retrieval system
