Oncorhynchus masou masou (cherry salmon): 135551703
Help
Entry
135551703 CDS
T10723
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135551703 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
135551703 (ddx39b)
03015 mRNA surveillance pathway
135551703 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135551703 (ddx39b)
03041 Spliceosome [BR:
omm03041
]
135551703 (ddx39b)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135551703 (ddx39b)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135551703 (ddx39b)
Spliceosome [BR:
omm03041
]
Complex C
Other components
EJC/TREX
135551703 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135551703 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
135551703
NCBI-ProteinID:
XP_064838960
LinkDB
All DBs
Position
13:complement(9186387..9204334)
Genome browser
AA seq
428 aa
AA seq
DB search
MTEQDVENELLDYEEDDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRILALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEILRLTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEMDARTLNDVQDRFEVNISELPDEIDI
SSYIEPTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactacgaagaggacgatgtggtggga
gatctatcaggaggggatattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctgctgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgaatgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccaccctacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacactcgagagctggcgtttcagatcagcaaagagtatgagagattctccaaatacatg
ccgactatcaaggtggcagtgttcttcggtggcctgtctataaagaaggacgaagaggtg
ttgaagaaggagtgtccccatgtggtggtggggaccccggggcgaatcttggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaactcgacatgcgcagagacgtccaggagatacttcgtctgaccccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagatccgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
gggctgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgtgcagcgctgt
gtggctctggcccagcttttggttgagcagaacttcccggctattgccatccaccgcggg
atgcctcaggaggaacgtctctctcgttaccaacagtttaaagattttcagagacgcatc
ctggtggccaccaacctgtttggcagagggatggacatcgagagggtcaacatcgccttc
aactacgacatgccggaggactctgacacgtacctgcacagggttgccagggcgggccgg
tttggcaccaaaggcctggccatcacatttgtgtctgatgagatggatgcccgtaccctt
aacgacgtccaggaccgattcgaggtgaacatcagcgagctgcccgatgagatagacatc
tcatcttacattgaaccaacccggtaa
DBGET
integrated database retrieval system
