Oncorhynchus masou masou (cherry salmon): 135551919
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Entry
135551919 CDS
T10723
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
135551919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135551919
03036 Chromosome and associated proteins [BR:
omm03036
]
135551919
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
135551919
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
135551919
PBAF complex
135551919
GBAF(ncBAF) complex
135551919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
135551919
NCBI-ProteinID:
XP_064839272
LinkDB
All DBs
Position
13:complement(23236607..23263812)
Genome browser
AA seq
981 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTTAQRKKDGNPSARYWESHDSLVQLETVRQWIGKHYKKY
VQADSPSCQALASLTLQMLQFQEEVFGRRAEIRTHTKLPSQCFLDLRPGGGLCHILGTAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTTLEKTLVQNSCLSRPVVYVDQEVDQNLNSRLAD
IITKHQGSLTEDRTQASHHIYPRPAVTDQGQYWEWVRPVMRKDNYVLVHWGRHPDSYDSW
LSSSDVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVT
DQQDRKFTPLKKRRRSPSPPSSDGKKKGGKKSGGFKRRGPKEEEEDVEEDLTKDMEDPTP
VPNMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGE
DNITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYR
LNPQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTL
ADTPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGASSG
RDWTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGP
LAYQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNE
AEKADVMDGEKMETDSGSQQSLQADRQTVLEPSGGERLVEGERVKRENAEMTVTEERDCD
SGGNRESDRGEKEEIAGRWREVEQDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAA
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQ
LKHAEMKILQQREQQAPYTPQQHTGQSMPSQMMPTGGNSLTMAPRHPGAPNGMYPPPQPD
GIAPTQPGPPSTAVHSRGAET
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtctgggggacccaacatcgggactcccgggaccagccagagtccacac
accaccacggcacagcggaaaaaagacgggaatccgtccgcgaggtactgggagagccac
gactccctggttcagctcgagacggtgcgacagtggatcgggaagcactacaaaaagtat
gtgcaggcagattctccatcctgccaggctctagcctccctcacccttcagatgcttcag
ttccaggaggaagtgttcggcagacgggctgaaatccgcacacacacaaaactaccttct
cagtgcttcctggacctgcgcccaggaggcgggctttgccacattcttggcactgcatac
aagttcaagactgatcagggctggagaaggtttgacctacagaactcctccaggacggac
cgaaacgtagaaatgtttactactctggagaagaccctggtccagaatagctgtctgtcg
aggcccgtcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcatcaccaaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatc
tacccccgtccagctgtcacagaccaaggtcaatattgggagtgggtgcgccctgttatg
cggaaggacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctgg
ctgtcctccagtgacgtagagggagaggtgcaggaacctccacacacacacagaccttgg
agggtgcatgcaggctgggtgttggatacggaggtgtataatgagtggatgaatgaagaa
gactacctggtagatgacagaaacgttcctctcatcctccgccggagagtccacgtcaca
gaccaacaggaccgtaagtttactccactgaagaagagaagacgctccccctctcctccc
tcttccgatggcaaaaagaaaggaggaaagaagagtggcgggtttaagaggcgtgggcca
aaggaggaagaggaagacgtagaggaggatctgactaaagatatggaggatccaacacct
gtccctaatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgag
aacactcctgtcaaaggagggatgatgaccgacctggatgaaattgaggatgactctctg
cttcctggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaa
gacaacatcacagaacaaactcaccacatcatcgtcccgtcctacaccgcctggttcaac
tataactgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaac
aagtccaaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccgg
ctgaacccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtc
tgcgccgtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtg
gatgcagaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactg
gctgatacaccctcaggactggccccgctgcagcacagaccactacaggtgtcgtcctcc
cagcagatgttgttcttccctgagagaagtgtagagaagccctcagactctcagaacttt
ggcctcagaacagacctgtatgccaggaaacaccccaagagtaaaggagccagttcaggg
agggattggacagaacaggagacccttctactgttggaggctttagaggtctatagagac
gactggaacaaggtgtcagaacacgtggggtctcgtacccaggacgagtgcatcctccac
ttcctgcgcctgccaatagaagacccgtatctggaggactccgcctcctctcttggccca
ttggcctaccagcccgttcctttcagccaatcagagaatccggtgatgagcaccgtggcg
ttcttggcgtccgtggttgatccccgagttgcctccgccgccgccaaggctgctttggag
gagttttgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcactcaatgag
gctgagaaggcagatgtgatggatggtgagaagatggagactgactctggctcccagcag
tctctgcaggcggatagacagacggttctagagcccagtggaggagagagattagtggag
ggagaacgagttaagagagagaatgctgaaatgacagtcacagaggagagagactgcgat
agcggagggaaccgcgagtcagaccgaggggagaaggaggagattgcgggacgatggagg
gaagtagagcaggatgaagggaggagactagcagagctggagttggtagatgggaccgtt
accacggcagcagctgctgctctaggcgccgctgctactaaggccaagcacctagcagca
gtagaggagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaag
ctggagatcaagctcagacactttgaggagctggagaccatcatggaccgagagaaagag
gctttggagcaacagcgtcaacagctgttgtcagagcgacagagtttccactctgagcag
ctgaaacatgcagagatgaagattctacagcagagagagcagcaagcaccatacactcca
caacaacacacaggccagtccatgcccagccagatgatgcctactgggggaaactctctc
accatggccccccgacaccctggagctccaaacggcatgtacccaccaccacagcctgat
gggatagctccgacccagcctggtcctccaagcacagccgtacacagccggggagcagaa
acatga
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