Oncorhynchus masou masou (cherry salmon): 135551970
Help
Entry
135551970 CDS
T10723
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135551970 (snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135551970 (snrnp40)
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135551970 (snrnp40)
Complex C
U5 SnRNP specific factors
135551970 (snrnp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Beta-prop_IFT140_2nd
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
135551970
NCBI-ProteinID:
XP_064839363
LinkDB
All DBs
Position
13:24355105..24360834
Genome browser
AA seq
353 aa
AA seq
DB search
MIEPKKRPGDMALVPAGGVKRPRTELIAAAQSQQLVGPPRSSSLQAPIMLMCGHEGEVYC
CKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMDLHYNTDGSLLFSASIDK
TVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDATVRLWDIRKKGAVHTFQ
NTYQVLAVTFNDTSDQILSGGIDNDIKVHVDQLLVWDLSQNKLVYSMHGHGDSLTGLSLS
SEGSYLLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGS
ADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgattgagccaaagaagagaccgggggacatggctttggttcctgccggcggagtcaag
aggcccaggacggaactgatcgccgcggcacagtcgcaacagctcgtgggccctccccgc
agctccagcctgcaggctcccatcatgctgatgtgtggccatgagggagaggtctactgc
tgcaagttccatcccaatggagccaccttggcctcctctggctatgacaggctcatcttg
atgtggaatgtgtatggggattgtgataactttgccaccttgaagggacacagtggagct
gtgatggaccttcactacaacacagacggcagcctgctgttcagtgccagtatagataag
acagtgggagtgtgggacagtgagacgggcgagagaatcaagcgtctaaaaggccacacc
tccttcgttaactcctgctaccctgctcgacgcggaccccagcttgtttgtaccggcagt
gacgacgcaactgtcaggctgtgggacatccgtaagaagggggcggtccatacgttccaa
aacacctaccaggtgttggctgtcacattcaacgacaccagcgaccagatcctgtctggg
ggcatcgacaatgacatcaaggtacatgttgatcaactccttgtgtgggacctgagtcag
aataagctggtctacagtatgcatggtcatggtgattctctgactggactcagcctgagc
tcagaggggtcctacctcctctccaactccatggacaacacagtgcgtatttgggacgtc
cgtccgttcgctcccaaggagaggtgtgtgaagatattccaggggaacattcacaacttt
gagaagaaccttctgaggtgttcctggtccgctgacggcagcaagattgcagcaggctca
gccgacaggtttgtatatgtgtgggacaccacgtctcgtaggatcctgtacaagctgcca
ggccatgctgggtcagtcaatgaggtcgccttccaccctgaggagcctattgtcctctct
ggtgccagtgacaagagactctacatgggagagattcagtag
DBGET
integrated database retrieval system
