Oncorhynchus masou masou (cherry salmon): 135552334
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Entry
135552334 CDS
T10723
Name
(RefSeq) superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135552334
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135552334
mRNA degradation factors
3'-5' decay
Ski complex
135552334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135552334
NCBI-ProteinID:
XP_064839970
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Position
13:41340503..41389486
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AA seq
1250 aa
AA seq
DB search
MERIDLPPVGPTDLPLSLLEMGCSGRFELITHKQSNDQPLYPQSTLPHGLPPTSVGLETE
VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVRVDSLLHCSSSPLHSGISVVRDPTTGML
LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMDELTLEQIKTKSE
LEEDIDFENGLLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIVDSQPEAEEKEK
GLGSRDAPKLPRTNSLEDLGIKDSPATPGTTSTEKKDGGTTKPGEGHEERKRWAIPVDIT
SPCDDFYKRIPNPAFKYPFELDMFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRI
KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYSAIDAKKERTS
KHAQSFGTKNASQKTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLASMD
FTSSGEKSDIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEML
FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD
ATGTVIILCKSGVHDMGELHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF
SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRITAEALQCAVLGS
VNGLKALSVGRVVVVNNKQHFNALGVLLQVSSDSVNRTFTALVICEKGNEEGGGDSPNAS
AFPHLYNTALFLPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQPRFRLDP
PGQAISTATQELLRLAEANPGGVVTLDAVNDLQLKSVDVVEGTMRLRVLQDSLKDFNCIH
SPTFSEQFLRVQERMSVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDNSGAVQL
KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLQEGIE
RVLAVAQRIGELQRDCGITQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV
VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatagatcttccccctgtgggccccacagatctcccgctatccctgctggag
atgggttgctctggcaggtttgagctcatcacacataaacagtccaatgaccagcccctg
tatccacaaagcacgctcccccatggactccctcccaccagtgttggcctggagacagag
gtagagaagcgcttcctacgcgaccctgcctggcttcccatacacgataccgacgctgcc
ttccacaggtttctgaagctggctgagcgagacgttcgtgtggactctcttcttcattgc
tcttcgtctcctctccactctggcatctcagtagtcagagatccaacgacaggaatgctt
ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattcaatgtcc
ctgcagcgtccaccaaaccctaatccctctgagagcctccgaggaagcaacaccaactac
ccctttctgcccggtggtatggacgagctgacactggagcaaatcaagacgaaatccgag
ctggaggaagacatagactttgagaacgggttactcacagtgccccctggacttaaagtt
gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc
ctcctatccacctttgatgacatcgtagactcccagcctgaggcagaggagaaagagaaa
ggactcggaagcagagatgctccaaaactacccagaaccaacagcctggaagacctgggg
atcaaggactctcccgctacacctgggaccacctcgacagagaagaaagatggaggaacg
accaaaccaggagagggccacgaggagaggaagagatgggctatcccagtagacatcacc
tccccttgcgatgacttctacaaacgcatccccaaccctgctttcaagtatccctttgag
ttggacatgttccagaaacaggcagtgttgaggctggaggcccatgagtctgtgtttgtg
gcagctcacacatcagcaggcaaaaccgtggtggcagaatacgccatagctctctcacaa
aaacacatgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttc
cgggacttcaagaccacctttggggatgtggggctgctgactggggatgtccagctgagt
cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt
tcagaggtcatcagagatttggagtgggtgatctttgacgaagttcactacatcaatgat
gctgagagaggagtggtgtgggaggaggttctgatcatgttacctgaccacgtcagcatt
attctgctgagtgccactgtccccaacgctgtggagttcagtgagtggatcgggcgcatt
aagaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac
ctgtacacaggcaacagtaccaagacccagaaagagatgttcctactgctggaccctaca
ggcaacttccaaaccaaagggtactattctgcaatagatgccaaaaaggaacgcaccagt
aaacacgcccagtcctttgggacgaaaaatgcatctcagaagactacacccaaccaggac
cgtgcggtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtcgtg
gcgttcaccttctccaggacgcgctgcgacgacaacgcccgctctctagcctccatggac
ttcaccagctcgggggagaagagcgacatccactccttcttccagaagagcctgagccgc
ctcaggggaggggaccgccagctgccccagatcctgttgatgagggatctgctgaagagg
gggattgcagtacatcacagcggcatcctgccaatcctaaaggaggtcattgagatgctg
ttctcacgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaat
atgcccgcgaggacagttgtgtttgacagcatacggaaacacgatggtaccggcttccga
aacttgctgcctggtgagtatatccaaatggctggtagagctggtaggagaggtctggat
gccacaggcacggtcatcatcctctgcaagtcaggggtacatgatatgggagaactacat
gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg
attctcaacctgctgcgtgtggaggccctccgagttaccgacatgatgaggaggagcttc
tctgagagccacagagacacacaggcgcatgagcagcagatcggtcagttgaaacagact
ctgtcctctcttcctcctctggacacggagggtcagctgtctgacctactgccgtactac
tacactgtcactgagctacgcatcaccgctgaggcgctgcagtgtgcagttctggggtct
gtgaatgggttgaaggctctctccgtgggacgagtggtagtggtcaacaacaaacagcac
ttcaacgcccttggagtcctcctacaggtgtccagcgactcagtgaatcgtacgtttacc
gctctcgtcatctgtgagaaaggcaatgaggagggaggaggggacagccccaacgccagt
gccttcccccacctctacaacactgccctctttctacctgagggtccctgcagtcacacg
gtccagaagctgaagctacaggacgtgtcagccatcacagtcaagaccctgaaggtgatc
cctgaccgaatcattgacaactataacaagaggcagcagccgcgcttcaggcttgatcct
ccgggccaagccatctccacggcaacccaggagctcctgcgattggcggaggccaaccca
ggcggggtggtgacccttgacgcggtgaatgacctccagctgaagagtgtggatgtggtg
gagggcaccatgaggctgcgtgtgctgcaggacagcctcaaagacttcaactgcatccac
tcacccaccttctcagaacagtttctgcgggtgcaggagaggatgagtgttcaggaggag
ctggacaaactgctcttcctcatctcagatcagtccctgtctctactgccagagtaccac
cagagaatcaaggtcctccagtccttgcagtacgtggacaatagcggtgctgtgcagctg
aagggcagggtggcctgccagatcagtagccatgagctgctcctcacagagctactgttt
gagaacgccctgagtcccctggcccctgaggagagcgccgccctgctgtcctgtctggtc
tttcaacagaagacccaggtggagccccacatcaccaacacactgcaggagggtattgag
agagtgctggcagtggcccagcgtattggggaactgcagagggactgtgggataacccag
acagctgaagaatttgtgggccagttcaagtttggtctgaccgaagtggtgtactgctgg
gccagaggcatgccatttgcagagattgcacagttaacagacgtccaggagggcacggtg
gtgcgctgcatccagagactcgacgaggtgctgaaggaggtgcgccaggcagcccgcatc
gtgggagactcggtcctgggcagcaagatggagaaggcctccctggccattcgcagagac
atcgtgttcactgcttcgctctacacacactga
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