Oncorhynchus masou masou (cherry salmon): 135552459
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Entry
135552459 CDS
T10723
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135552459 (col4a4)
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135552459 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135552459
NCBI-ProteinID:
XP_064840179
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Position
13:complement(47722008..47872970)
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AA seq
1671 aa
AA seq
DB search
MTVSTCCTTWTKLPLWWLVIMVVAGQAVMGGDQPEGLCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGEEGFPGVSGPKGDVGIAGVPGYPGLDGVPGHPGP
GGVPGLPGLDGCNGTRGDSGFPGIHGLDGPDGRAGFSGIKGLPGDPTVQFIQYPGIPGDV
GSAGVTGLPGFQGISGPRGPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LPGYPGFPGPPGVKGILGSPGLPGLIGTEGPKGIQGDLGPKGLTEFRQVNYTACRGMPGE
SGLPGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPT
PGEPGKPGTAGLRGLKGERGSPGTYCTPGSPGEPGSDGDQGPPGSAGFPGSKGIDGDCDC
ELLQPSKGDPGFMGIPGLPGLRGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGPKGQ
KGDVYLCIKGVKGDIGLPGLAGRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERGYPG
NDGPKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNPGAP
GQKGDSGSPGLNGESGPPGYLGAVGPDGVKGEKGDFGLSGPPGPIGSVGCVGDSGEAGAE
GLSYDGAAGSPGFRGSPGLKGPFGDSVPGAPGPIGLKGVLGLSGPKGVPGPPGPIGLTGA
AGLPGTPGRKGEQGESGATGRYGAPGPTPEQCEEGAPGLQGSMGLIGDTGPPGYAGEKGD
NGEEGLSGTGPKGAAGKPGSPGFPGYLGAQGPVGPLGDPGIPGAQGQKGIIGVPGRDGSV
GGPGRSGALGSPGRKGERGFDGQRGLPGDEGLKGEKGRKGAPGDTGDTNFIPIKGQPGAP
EPPGLDGFTGPRGDKGPAGGRGLPGNPGLLGGPGIEAGPQGPPGTCGRSGEPGLPGLPGQ
RGIIGFPGEIGDQGESGCTGSPGTPGFPGYSGLKGERGDSIGIPGPAGDRGATGDTGAFA
APGDQGDVGEPGVSGAPGPKGLTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSGQTG
PKGDQGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGCQGP
QGPSQPGPLGPKGQSGLTGSPGNTGASGLPGMDCKESMPGHCGESGFPGRDGPPGSPGDI
GCSGPALPMTSEEGDNGVPGLPGLKGDKGTSGPPGLPGIAGLPGPKGERGASGMMGVPGH
PGSTGTCGPPGPKGTKGLQGDEGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTGGPG
SNGFQGQKGRSGQLGSPGFPGPEGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAGSPG
PTTTFNSGFLLVMHSQSDMLPSCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCMRLF
STMPFSFCNMGTCHYASRNDKSYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPAVAV
HSQDNSNPLCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPR
GTCHYFANIYSFWLTRVGADGPLSSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctacctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctggacaggccgtaatggggggggaccaacctgagggactctgtgggggg
cgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttccaggagtt
ttaggacgacagggacctcaggggccacctgggttcccgggcccccaggggcctcttgga
gagaagggatatcgaggagaggagggcttccctggcgtatctggaccgaagggagacgtg
ggtattgctggcgtaccaggatatcctggactagatggtgtcccgggtcacccagggcca
gggggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggactctggt
ttccctggaatccatggtctggatgggcctgatgggagagcgggtttctcagggatcaaa
ggactgccaggggaccccaccgttcagttcatccagtaccctggtatacctggtgatgtc
ggcagtgctggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcagatggtttaactggttcacctggcctgagaggt
ccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaagggcccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgatggattc
gactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
cttcctggatatcctggcttccctgggccacctggtgtaaaggggatcctcgggagccct
ggcctacctggtctgataggaacggagggacccaaggggatccaaggagatcttggtccc
aaaggactgacagagttcaggcaggttaattatacagcttgtagagggatgccaggggag
tcggggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggc
cgccaaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaataggg
atgactggcaccaagggggttaaaggagaaccagggatgcactaccagaatgggcctaca
cccggagagcctggtaaaccgggcacagcaggcctccgtggtctgaaaggagagcgcggc
tccccaggtacgtactgcacccctggttcaccaggagagccaggatcagatggagatcaa
ggtcctcctggatctgcagggttccctggtagcaaaggaattgatggtgattgtgattgt
gagctccttcagccttcaaagggagaccctggctttatggggattccgggattgccaggg
ttacgaggactttgtggggcaccaggcccgaggggtgacattggttttcccggagacata
ggaagaagtggggcagacggcttcccaggatttgcaggtgtccggggtccaaaaggtcag
aaaggtgacgtctatctatgcattaaaggtgtgaagggagacattggcctcccggggctg
gctggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggtgtgcctggt
gacgctggcccagagggtgacagttactcaggattcccgggtgagagagggtatccaggt
aatgacgggccaaaagggcttgctggacccgtcggccccccaggacctgatgtgattggg
gcagtgggggaacggggactcccaggcgaccagggacctccaggattcaggggatcgcct
gggctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccctggtgcccca
ggacagaaaggcgattccggaagcccagggctgaacggagagtcaggacccccagggtat
cttggagctgtgggcccagacggggtgaagggagagaaaggagactttgggctgtctggc
ccacctggacccataggctcggtggggtgtgttggagactctggagaggctggtgctgag
ggtctgagctacgacggagctgccggctctcctggcttccgagggtctccaggactgaag
ggcccatttggggactctgtccctggtgctccaggacctataggcctcaagggtgtactg
ggtctgtcggggcccaaaggagtgccaggtccacccggtccaatcggattaacaggtgct
gcggggcttcctggtacaccgggaaggaagggggagcagggagagagtggtgccacaggc
agatatggggccccagggcccacccctgaacagtgtgaagagggggccccaggcctacaa
ggatccatgggactaataggggacacaggccctccaggttacgcaggcgagaagggtgat
aacggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaaccgggctct
ccagggtttcctgggtaccttggagcccagggccccgtggggccattaggagaccctggc
atacccggggctcaagggcagaaaggtataataggggtacctggtagggatgggtcagtt
ggtggtccaggaaggagtggagcactaggatccccgggaaggaaaggagagaggggcttt
gacggacaacgaggcttaccaggagatgagggcctcaaaggagaaaagggtagaaaaggt
gcccccggagacacaggagacaccaacttcattccgatcaaaggacaaccaggagctccc
gaacccccaggtctggatggcttcactggtccaagaggtgacaagggtcctgcgggaggc
aggggtctaccagggaacccagggcttttgggggggcctggcatagaggctgggcctcaa
ggaccacctggtacatgtggacgctcaggtgaacctggactacctggcctgcctggccag
aggggtatcataggcttccctggagagattggtgatcagggtgaatctgggtgtactgga
tctcctggcacacctggcttcccagggtacagtggtcttaaaggtgaacggggcgactcc
attggcatccctggaccggctggtgatagaggagctacaggagacactggagcatttgcc
gcaccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctccaggacctaaa
gggttaactggtcctcaaggatccatcggacctccagggcctgctggtgtgatcggaccc
ccaggcctgagtggtaaacctggggctgatggtctcccagggacctctggacaaactggg
cccaagggagaccaaggaccacttggactcaaaggtccacctggaccactgggtttgcat
ggactggacggactaaagggtgtgaagggagaggtaggggccagaggcccaggtgtgccc
ggtccctccggtgctccaggctataaaggagagaagggttccagggggtgtcaagggcct
caggggccctctcagccaggacctctgggccccaagggccagtctggactaacgggaagc
ccaggaaacacaggtgcctccggtctaccaggcatggactgtaaggagtccatgcccggc
cactgtggggaatcaggcttccctggacgcgacggaccaccaggttcaccaggtgacatt
ggctgctccggccctgctctgcccatgaccagtgaagagggggacaacggtgtgcccggc
ttaccagggctcaaaggggacaaggggacttcaggcccccccgggctgcctggcattgca
gggttacctgggcctaaaggtgagagaggagcttcggggatgatgggggtcccaggacac
cccggttccacaggaacatgtgggcccccaggacccaaaggaaccaagggactacaagga
gatgaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatcccacctcct
cctggacccgtaggcgcacccggtcaaccaggccttcctggcttcactggcggcccggga
tccaacggttttcagggacagaaagggagaagtggccagttgggttcaccaggattcccg
gggcccgagggccccccaggagcagacggggccccaggggacagtggggtacagggggag
aggggggcattgggaccacagggcgccccaggtcctttgggagatgccggcagcccaggc
cccaccaccacctttaactctggcttcctgttggtgatgcacagccaatcagacatgctc
ccttcctgtccagcagacatgacacaactgtggactggctacagtttgctgtacctggag
ggccaagagaaagcccacacacaggatcttggtcaggctgggtcatgtatgcgtctcttc
agcaccatgccgttctccttttgcaacatgggcacgtgtcactacgccagccgcaatgac
aagtcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggcagaccaggac
atccaacaacacatcagccgctgcgtggtgtgtgaggccccctcccctgctgtggcagtt
cacagccaggacaacagcaatcccttatgtccccccaactggaggagtctttgggtggga
tactccttcctcatgcacacaggggccggcgatgagggtggtggccagtctctgacatca
tcaggaagctgcctgagggacttccgtgcccagccgttcgtggaatgccagggcccgcgg
ggtacgtgccactacttcgccaacatctacagcttctggttgacccgggtgggcgcagat
ggaccgctgagctcctctacttcacagggcacgctcaaagaggagtggcaacagcgcctc
aacgtgggccggtgcaacgtgtgtatgaaggagtga
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