Oncorhynchus masou masou (cherry salmon): 135552459
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Entry
135552459 CDS
T10723
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135552459 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135552459 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135552459 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135552459 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omm04147
]
135552459 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135552459 (col4a4)
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135552459 (col4a4)
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135552459 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135552459
NCBI-ProteinID:
XP_064840179
LinkDB
All DBs
Position
13:complement(47722008..47872970)
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AA seq
1671 aa
AA seq
DB search
MTVSTCCTTWTKLPLWWLVIMVVAGQAVMGGDQPEGLCGGRDCSTCQCFPAKGAQGVPGV
LGRQGPQGPPGFPGPQGPLGEKGYRGEEGFPGVSGPKGDVGIAGVPGYPGLDGVPGHPGP
GGVPGLPGLDGCNGTRGDSGFPGIHGLDGPDGRAGFSGIKGLPGDPTVQFIQYPGIPGDV
GSAGVTGLPGFQGISGPRGPTGPVGLDGSDGLTGSPGLRGPPGEKGRSLPGQKGDEGDQG
TQGPPGPFEFVDPPEDFYIKGSKGRSGVKGECGPRGSDGFDSLTGIKGEKGIIGFPGVRG
LPGYPGFPGPPGVKGILGSPGLPGLIGTEGPKGIQGDLGPKGLTEFRQVNYTACRGMPGE
SGLPGRPGPPGDVGEMGMHGRQGLPGVSIPGTNGEPGPIGMTGTKGVKGEPGMHYQNGPT
PGEPGKPGTAGLRGLKGERGSPGTYCTPGSPGEPGSDGDQGPPGSAGFPGSKGIDGDCDC
ELLQPSKGDPGFMGIPGLPGLRGLCGAPGPRGDIGFPGDIGRSGADGFPGFAGVRGPKGQ
KGDVYLCIKGVKGDIGLPGLAGRPGFTGRRGDEGNPGVPGDAGPEGDSYSGFPGERGYPG
NDGPKGLAGPVGPPGPDVIGAVGERGLPGDQGPPGFRGSPGLKGVRGDTLPCIPSNPGAP
GQKGDSGSPGLNGESGPPGYLGAVGPDGVKGEKGDFGLSGPPGPIGSVGCVGDSGEAGAE
GLSYDGAAGSPGFRGSPGLKGPFGDSVPGAPGPIGLKGVLGLSGPKGVPGPPGPIGLTGA
AGLPGTPGRKGEQGESGATGRYGAPGPTPEQCEEGAPGLQGSMGLIGDTGPPGYAGEKGD
NGEEGLSGTGPKGAAGKPGSPGFPGYLGAQGPVGPLGDPGIPGAQGQKGIIGVPGRDGSV
GGPGRSGALGSPGRKGERGFDGQRGLPGDEGLKGEKGRKGAPGDTGDTNFIPIKGQPGAP
EPPGLDGFTGPRGDKGPAGGRGLPGNPGLLGGPGIEAGPQGPPGTCGRSGEPGLPGLPGQ
RGIIGFPGEIGDQGESGCTGSPGTPGFPGYSGLKGERGDSIGIPGPAGDRGATGDTGAFA
APGDQGDVGEPGVSGAPGPKGLTGPQGSIGPPGPAGVIGPPGLSGKPGADGLPGTSGQTG
PKGDQGPLGLKGPPGPLGLHGLDGLKGVKGEVGARGPGVPGPSGAPGYKGEKGSRGCQGP
QGPSQPGPLGPKGQSGLTGSPGNTGASGLPGMDCKESMPGHCGESGFPGRDGPPGSPGDI
GCSGPALPMTSEEGDNGVPGLPGLKGDKGTSGPPGLPGIAGLPGPKGERGASGMMGVPGH
PGSTGTCGPPGPKGTKGLQGDEGPKGEKGNVITPLIIPPPPGPVGAPGQPGLPGFTGGPG
SNGFQGQKGRSGQLGSPGFPGPEGPPGADGAPGDSGVQGERGALGPQGAPGPLGDAGSPG
PTTTFNSGFLLVMHSQSDMLPSCPADMTQLWTGYSLLYLEGQEKAHTQDLGQAGSCMRLF
STMPFSFCNMGTCHYASRNDKSYWLSTTASVPMMPVADQDIQQHISRCVVCEAPSPAVAV
HSQDNSNPLCPPNWRSLWVGYSFLMHTGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPR
GTCHYFANIYSFWLTRVGADGPLSSSTSQGTLKEEWQQRLNVGRCNVCMKE
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgacggtctctacctgctgcaccacctggaccaaactccctctctggtggcttgtgata
atggtcgttgctggacaggccgtaatggggggggaccaacctgagggactctgtgggggg
cgggactgctccacctgccagtgtttccctgctaaaggagcccagggtgttccaggagtt
ttaggacgacagggacctcaggggccacctgggttcccgggcccccaggggcctcttgga
gagaagggatatcgaggagaggagggcttccctggcgtatctggaccgaagggagacgtg
ggtattgctggcgtaccaggatatcctggactagatggtgtcccgggtcacccagggcca
gggggtgttcctggtctaccagggcttgatggctgtaacgggaccagaggggactctggt
ttccctggaatccatggtctggatgggcctgatgggagagcgggtttctcagggatcaaa
ggactgccaggggaccccaccgttcagttcatccagtaccctggtatacctggtgatgtc
ggcagtgctggggttactggactgcctggcttccaaggcattagcggccctaggggacct
actggaccagttggtttggatggatcagatggtttaactggttcacctggcctgagaggt
ccgcctggagagaaaggaagatcattgccaggacagaaaggagatgaaggagaccagggt
acccaagggcccccaggaccctttgagtttgtggaccccccagaagacttctacatcaaa
ggaagcaaggggaggagtggtgtgaagggagagtgtggacccaggggaagtgatggattc
gactcgttgacagggataaaaggagaaaagggaatcatcggatttcctggagtcaggggt
cttcctggatatcctggcttccctgggccacctggtgtaaaggggatcctcgggagccct
ggcctacctggtctgataggaacggagggacccaaggggatccaaggagatcttggtccc
aaaggactgacagagttcaggcaggttaattatacagcttgtagagggatgccaggggag
tcggggctgcctggaagaccaggaccacctggagatgttggggagatggggatgcacggc
cgccaaggactgcctggggtatcaatacctggtaccaatggtgagcctggcccaataggg
atgactggcaccaagggggttaaaggagaaccagggatgcactaccagaatgggcctaca
cccggagagcctggtaaaccgggcacagcaggcctccgtggtctgaaaggagagcgcggc
tccccaggtacgtactgcacccctggttcaccaggagagccaggatcagatggagatcaa
ggtcctcctggatctgcagggttccctggtagcaaaggaattgatggtgattgtgattgt
gagctccttcagccttcaaagggagaccctggctttatggggattccgggattgccaggg
ttacgaggactttgtggggcaccaggcccgaggggtgacattggttttcccggagacata
ggaagaagtggggcagacggcttcccaggatttgcaggtgtccggggtccaaaaggtcag
aaaggtgacgtctatctatgcattaaaggtgtgaagggagacattggcctcccggggctg
gctggtcgtccaggcttcactgggaggagaggagacgaagggaatccgggtgtgcctggt
gacgctggcccagagggtgacagttactcaggattcccgggtgagagagggtatccaggt
aatgacgggccaaaagggcttgctggacccgtcggccccccaggacctgatgtgattggg
gcagtgggggaacggggactcccaggcgaccagggacctccaggattcaggggatcgcct
gggctcaaaggagtcaggggtgacaccctaccctgcatacccagtaaccctggtgcccca
ggacagaaaggcgattccggaagcccagggctgaacggagagtcaggacccccagggtat
cttggagctgtgggcccagacggggtgaagggagagaaaggagactttgggctgtctggc
ccacctggacccataggctcggtggggtgtgttggagactctggagaggctggtgctgag
ggtctgagctacgacggagctgccggctctcctggcttccgagggtctccaggactgaag
ggcccatttggggactctgtccctggtgctccaggacctataggcctcaagggtgtactg
ggtctgtcggggcccaaaggagtgccaggtccacccggtccaatcggattaacaggtgct
gcggggcttcctggtacaccgggaaggaagggggagcagggagagagtggtgccacaggc
agatatggggccccagggcccacccctgaacagtgtgaagagggggccccaggcctacaa
ggatccatgggactaataggggacacaggccctccaggttacgcaggcgagaagggtgat
aacggagaggagggtctgtccggcacgggtcctaaaggagctgcagggaaaccgggctct
ccagggtttcctgggtaccttggagcccagggccccgtggggccattaggagaccctggc
atacccggggctcaagggcagaaaggtataataggggtacctggtagggatgggtcagtt
ggtggtccaggaaggagtggagcactaggatccccgggaaggaaaggagagaggggcttt
gacggacaacgaggcttaccaggagatgagggcctcaaaggagaaaagggtagaaaaggt
gcccccggagacacaggagacaccaacttcattccgatcaaaggacaaccaggagctccc
gaacccccaggtctggatggcttcactggtccaagaggtgacaagggtcctgcgggaggc
aggggtctaccagggaacccagggcttttgggggggcctggcatagaggctgggcctcaa
ggaccacctggtacatgtggacgctcaggtgaacctggactacctggcctgcctggccag
aggggtatcataggcttccctggagagattggtgatcagggtgaatctgggtgtactgga
tctcctggcacacctggcttcccagggtacagtggtcttaaaggtgaacggggcgactcc
attggcatccctggaccggctggtgatagaggagctacaggagacactggagcatttgcc
gcaccgggtgaccaaggtgatgtaggtgaaccaggagtttcaggagctccaggacctaaa
gggttaactggtcctcaaggatccatcggacctccagggcctgctggtgtgatcggaccc
ccaggcctgagtggtaaacctggggctgatggtctcccagggacctctggacaaactggg
cccaagggagaccaaggaccacttggactcaaaggtccacctggaccactgggtttgcat
ggactggacggactaaagggtgtgaagggagaggtaggggccagaggcccaggtgtgccc
ggtccctccggtgctccaggctataaaggagagaagggttccagggggtgtcaagggcct
caggggccctctcagccaggacctctgggccccaagggccagtctggactaacgggaagc
ccaggaaacacaggtgcctccggtctaccaggcatggactgtaaggagtccatgcccggc
cactgtggggaatcaggcttccctggacgcgacggaccaccaggttcaccaggtgacatt
ggctgctccggccctgctctgcccatgaccagtgaagagggggacaacggtgtgcccggc
ttaccagggctcaaaggggacaaggggacttcaggcccccccgggctgcctggcattgca
gggttacctgggcctaaaggtgagagaggagcttcggggatgatgggggtcccaggacac
cccggttccacaggaacatgtgggcccccaggacccaaaggaaccaagggactacaagga
gatgaaggtccaaaaggagaaaaggggaatgtgatcactccattgataatcccacctcct
cctggacccgtaggcgcacccggtcaaccaggccttcctggcttcactggcggcccggga
tccaacggttttcagggacagaaagggagaagtggccagttgggttcaccaggattcccg
gggcccgagggccccccaggagcagacggggccccaggggacagtggggtacagggggag
aggggggcattgggaccacagggcgccccaggtcctttgggagatgccggcagcccaggc
cccaccaccacctttaactctggcttcctgttggtgatgcacagccaatcagacatgctc
ccttcctgtccagcagacatgacacaactgtggactggctacagtttgctgtacctggag
ggccaagagaaagcccacacacaggatcttggtcaggctgggtcatgtatgcgtctcttc
agcaccatgccgttctccttttgcaacatgggcacgtgtcactacgccagccgcaatgac
aagtcctactggttgtccaccacagcgtcagtgcccatgatgcccgtggcagaccaggac
atccaacaacacatcagccgctgcgtggtgtgtgaggccccctcccctgctgtggcagtt
cacagccaggacaacagcaatcccttatgtccccccaactggaggagtctttgggtggga
tactccttcctcatgcacacaggggccggcgatgagggtggtggccagtctctgacatca
tcaggaagctgcctgagggacttccgtgcccagccgttcgtggaatgccagggcccgcgg
ggtacgtgccactacttcgccaacatctacagcttctggttgacccgggtgggcgcagat
ggaccgctgagctcctctacttcacagggcacgctcaaagaggagtggcaacagcgcctc
aacgtgggccggtgcaacgtgtgtatgaaggagtga
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