Oncorhynchus masou masou (cherry salmon): 135552743
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Entry
135552743 CDS
T10723
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04137
Mitophagy - animal
omm04140
Autophagy - animal
omm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135552743
04137 Mitophagy - animal
135552743
04148 Efferocytosis
135552743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135552743
Transcription factors [BR:
omm03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
135552743
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GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
135552743
NCBI-ProteinID:
XP_064840627
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Position
13:60184980..60208724
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AA seq
627 aa
AA seq
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MDTKEEPVGKRSSTDQRKVRSRDAARCRRSLETELFYKLAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSGDTSEERVTDGDEDTVDGFYPRALAGFILVMTEEGDMIYLGDSVSKH
LGIPQLELLGQSVYDFVHPCDQEELRDLLAPRPGVSKKKPAQQHTVINFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHMRVCCSGEDSSPPASSFMTVLCEPIPHPSSVEFPLDRSTFL
TRHSMDLCFTHCDGRVSELVGYEPEDLIGKSAYKFHHALDSDHVTKSLHILLSKGQVCTS
LYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLKS
DPVSEASEETVCDSDNSSSAELSLQLKENPEDLLQLAPVSGDPIVPLTDFAEPAFGLPSS
SDSAPDFPQELCTPELWTLLSPIFSKLTSSAPALIPIEELPIEDKVAKLFAVCPDESVQK
RNQPEDMEVVDLDMLAPYISMDDDFLLSVQLPETPDSPSPEPPTATRKRSHEQDEDMPSQ
LMSQDKRPRHLVSPIQHKLLLSYALLDCLEDVDNPELELGPIPHRRSQLLTDRDPILGEA
QGLCDTAALMKDLFLSRPPDPLTSSLT
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaagaagagcctgttggaaaacggtcaagtacggatcagcggaaggtgcgt
tcccgggatgcggcgcgctgcaggcggagtctggagacggagctgttctacaagttggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttcctccgcatgcaccacctccgctcaggggacacgagtgaggagcgc
gtcacagatggggacgaggacacggtggacgggttctacccccgggcactggcaggcttc
atcctggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcagcaaacac
ctgggcatcccacagctggagttgcttggtcagagtgtgtatgactttgtccacccatgt
gaccaagaggagctacgggatctcctggcgcctcggccaggtgtgtccaagaagaaacca
gcgcagcaacacacagtgattaacttcttccttaggatgaagagcactctgactagtaga
gggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccacatg
cgtgtgtgctgcagtggcgaggattcatcacctcctgcaagcagcttcatgacagtgctg
tgtgagcccatcccccatccatctagtgtggagttccccctggaccgaagcacgttcctc
actcgacacagcatggacctgtgcttcacacactgcgatggcagggtgtcagagctagta
ggatacgagccagaagatctgattggcaaatctgcctacaaattccatcatgccctggac
tcagatcatgtgaccaagagcctgcacatccttctgtccaaaggccaggtgtgcaccagt
ctataccgtttcctggctaagagtgggggcttcgtgtgggcagagacccaggctacagtc
atctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctcagt
gtggtggagcaggcggatgtggtgttctcagtagaacagactggctgtgggctgaagagt
gatcctgtctctgaggcctccgaggagaccgtgtgtgacagtgacaacagcagcagtgca
gagctctccctccagctgaaggagaacccagaggacctcctccaactggcccctgtctca
ggagaccccatcgtacccctcacagactttgcggagccggcgttcggtcttccatcaagc
tctgactccgccccagatttccctcaggaactgtgcacccctgagctgtggacgctcctc
tcacccatattcagcaagctcacctcatcagcaccagcgctgatccccattgaggagctg
ccaatagaggacaaggtggcgaagttgtttgctgtctgtccagatgagagcgtgcagaag
agaaaccagcctgaggacatggaagtggttgatctggacatgctggctccgtatatctcc
atggatgatgatttcctgctcagcgtacagctccctgagacccctgacagcccctcccca
gagccccccactgctaccaggaaacgaagtcatgagcaggatgaagacatgccctcccag
ctgatgagtcaggacaagagaccgagacacttggtgtcccccatccagcacaaactgctt
ctcagctacgccctgctggactgcctggaggatgtagacaacccagagttggagctgggg
ccaatcccccacaggcggagccaactgctgacggacagagaccccatcctcggtgaagcc
cagggactatgtgacactgcagccttgatgaaggacctcttcttgtcccgcccacctgac
cccctgacctcctctctgacttga
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