KEGG   Oncorhynchus masou masou (cherry salmon): 135552823
Entry
135552823         CDS       T10723                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm03020  RNA polymerase
omm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:omm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    135552823
  09124 Replication and repair
   03420 Nucleotide excision repair
    135552823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:omm03021]
    135552823
   03400 DNA repair and recombination proteins [BR:omm03400]
    135552823
Transcription machinery [BR:omm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     135552823
DNA repair and recombination proteins [BR:omm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      135552823
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop
Other DBs
NCBI-GeneID: 135552823
NCBI-ProteinID: XP_064840770
LinkDB
Position
13:complement(64424359..64426872)
AA seq 143 aa
MASSGGSTTTVGDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSE
VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVE
GRFEDEELQQILDDIQTKRSFQY
NT seq 432 nt   +upstreamnt  +downstreamnt
atggcgtccagtggcggttcaacaacaactgtcggagatattgaggaggacgcttctcag
ctacttttccccaaagagttcgagaacgcggagacacttctaaactctgaggtacacatg
cttctggagcatcgcaagcagcagaacgagagtgcagaggacgaacaagagctatctgag
gtcttcatgaaaactctgaattatactgcacgtttcagccgtttcaaaaacagagaaact
atcgccagtgttcgcagcttgctcttgcagaagaagctgcataagtttgagttagccagt
ttggccaacctttgtccagaagcagcggaggaggccaaagccctcatccctagtgtggag
gggcggtttgaggatgaggagctgcagcaaatccttgatgacattcagaccaagagaagt
ttccagtactga

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