Oncorhynchus masou masou (cherry salmon): 135553307
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Entry
135553307 CDS
T10723
Name
(RefSeq) collagen alpha-1(XXII) chain-like
KO
K16630
collagen type XXII alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
135553307
NCBI-ProteinID:
XP_064841543
LinkDB
All DBs
Position
13:30678816..30754076
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AA seq
1624 aa
AA seq
DB search
MELRLACRASLVLVILALALSGQRVDAQSRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPATEFNLGLYRTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAAKGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIVAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGSRFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKLIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMIIYCDSKHAELETCCDLPTGPCPKKVVTEAPPIEIPTPTPAGVEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGDKGDTGALGAAGRTGLKGAKGETGKVITVKGDRGEKGDPGSQ
GTSGDKGSNGEKGTSGAAGLAGKDGSKGERGESGLAGDQGLPGPLGPKGIQGDSGLLGLS
GPRGVSGEKGLKGDKGSAGLRGDKGIDGFPGKHGVPGKDGLEGLTGAPGAAGLKGEKGET
GPAGMPGDMIQRDGLKGEAGPPGPRGPPGPDGPPGPPGATGQLGLPGEPGEFGQRGKKGE
SGLPGVDGLPGPPGSQGPPGGQGSPGQTGPPGLPGEIGFSGKPGEAGKAGLPGNDGLDGL
PGNDGAKGPRGETGLDGFPGKPGPKGEEGPPGPRGPGGEGGQVGLTGQPGVVGPKGEKGG
QGDRGQGGSLGPKGDKGDKGDTGPKGIPGIPGNVANVIPEPGEPGTPGERGERGEQGNPG
DIGQRGVPGEQGFAGLPGPQGPKGDVGPKGETGRQGEPGPPGLQGTQGTRGLPGNVGIPG
TLGPPGIAGQRGERGEMGKEGRAGPPGPPGDTGIQGPPGLPGKGKDGQNGDPGQQGIEGQ
PGQKGQPGSQGLQGVPGNRGPPGEGKVGPPGPSGPNGAVGPAGMRGLSGVAGTQGPAGHN
GLPGRPGEKGSPGEPGAAADLSDLNLKDVCSECPAGAPGQPGLPGTPGDKGQAGPPGKNG
QDGYQGQAGPAGTSGPPGANGEKGVKGDRGPQGGPGDKGEIGHTGPPGHPGAAGIMGNPG
NNGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRQGEQGESGKQGEPG
PQGQPGLRGMPGFKGHRGEPGPPGSKGEDGKEGRSGPEGKPGQDGNIGPLGPEGLAGRRG
ENGKPGEPGPSGKPGAPGTPGPAGAKGDPGNPGLPGFSGPKGPLGPTGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGSVGDPGMPGNPGPPGRKGHTGMMGMSGPPGEVGLTGPQG
TPGNPGQPGPRGESTSLETMRRLIQEELAKALDDKMAYLMAQIQPAHVKSTAGRPGPPGP
SGKDGSHGRPGPPGEPGMPGQNGGDGIRGPMGPKGERGSRGDKGENGVGQRGETGPSGPI
GPAGMPGYGKDGQPGATGAQGEPGNPGPHGQPGPSGPPGQCDPSQCAYYASLGSRPHTKN
VKGT
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactggcatgcagggcttccctagtcctggtcatactggcactggctctc
tcaggacagagggttgatgctcaaagcagggcaggctgtaagaacgtgcactatgacctg
gtgttcatcctggacacgtcgtccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggccgtg
gtacgctacagcgaccggcccgccaccgagttcaacctgggactctaccgcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggat
gccatcagctacaccaccaccaacatcttcacagagcgggccggggccaggcctgcagcc
aagggcatccagaaggtggctatcctcctgacagacgggaggagtcaagattacgtcttg
gaaccgtcaaaggcggcggcgaaggccggggtgaggatgttcgctgtgggcatcggggag
gctctgaaggtggagctggaggagatcgttgcagaacctaagaacgctcacgtgttccat
gtgacagacttcaatgccatcgacaagatcagagggcggctgaggagacggctctgtgaa
aatgtgctatgccccaatatgaaggtccaaccagaccgcttcaagcccaacagcaccagc
tatggattggaagaagttccagggttcgacctgatggaatacttcaaagtggaaaacata
ctgggatcaaggtttgatgagggccagagctcctatgttcgacttgggaccatgcctatt
gtacaacagacagaagacgtgttccctcaaggtctgccagatgaatatgcctttgtgaca
actttcaagttcaggaagacctcgagacgggaggactggtacctctggcagatctttgac
aagtacggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aatgcagtggggctgaccaaagacgcagtgagagctgtgttcaagaacgaggaggtggac
aacctgttcgacaggaactggcacaagatcgccctgagcgttgaggccaaggctgtgtct
ctctacctggactgcaaactcatccagaccctgcccatcggggacagggaggacatcgat
atccacgggaagactgtgatcggaaagaggctgtacgacagcgtgcccattgactttgac
ctccagagaatgatcatctactgtgattccaaacacgctgagctggagacctgctgtgat
ttgcccaccgggccgtgccccaagaaggtggtgacggaggcccctcccatagagatcccc
actcccacccctgcaggtgtggagcagcagagaggaccccaggcggtcaactgctcctgt
cccgctggagagaggggagagatcggtgtacctggggttgccggtcccaagggtgataag
ggtgatactggtgctctgggagcagctggacgtactggcctcaagggagccaaaggagaa
actggcaaagtaataactgtcaagggagacagaggtgagaagggggatcccggtagccag
gggacatccggtgacaaaggatccaatggggagaagggaaccagtggagcggcaggtctt
gctgggaaagatggatctaaaggggaaagaggtgaatctgggctggcaggtgatcaggga
ttacctggacctctgggaccaaagggaattcaaggagactcaggacttcttggtttatct
ggacccagaggcgtcagtggtgaaaaaggtttgaaaggagataaaggatctgcaggatta
aggggtgacaaaggtattgatggattccctggaaaacatggtgttcctggaaaagatggt
ttggaaggactgactggcgcacctggagccgctggcctgaaaggggaaaagggagagacg
ggccctgctggaatgcctggggatatgattcaaagagatggcttgaaaggagaggctgga
ccgccaggacctcgtggccctccaggacctgatggtccccctggaccccctggtgcaact
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaagaaaggtgaa
agtggattacctggtgttgacgggctacccggaccacctggttcccaggggcctcctgga
gggcaaggaagccctggacaaactggacctcctggtctacctggcgagattggattttca
gggaaaccaggagaggcaggcaaagcaggtttacctggaaacgatgggctggacggactt
ccaggcaatgacggagccaaggggcctagaggagagactggattggatggcttccctggt
aaacctggtcctaagggtgaggaaggaccaccgggaccaagaggacctggaggagagggg
ggacaagttggtttaactggacaaccaggtgttgttggaccaaaaggagagaaaggagga
cagggtgaccggggacaaggcggctctctcgggccaaagggtgacaaaggtgacaagggt
gacacgggacccaagggaattccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaacacctggagagagaggagaaaggggagagcaggggaatccagga
gatattggtcaacgaggagtgcctggtgaacaaggctttgcgggactgcccggtccacag
ggacctaaaggtgacgttggccctaaaggagagactgggagacaaggagagcctggtcct
ccaggattgcagggtacacagggtacccgtggactgcctggcaatgtgggcatccctgga
acccttggaccacctggaatagctggacagagaggagagaggggagagatggggaaggag
ggtcgtgctggccccccaggccctcctggagatacaggcatacaaggaccccctggccta
cccgggaagggcaaggacggacagaacggtgatcctggacagcagggaattgaaggacag
cccggccagaagggccaacccggatcccagggacttcagggggttccagggaacaggggt
cctccaggagaaggcaaagtcggacccccgggaccttcagggccaaatggagcagttgga
ccggcgggcatgagaggtctgtcaggcgtcgctggtacacagggacctgcaggacacaat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcggatttgaatctgaaggatgtgtgttcagagtgcccagccggagccccgggacag
cctggtctgccagggacaccaggggacaagggacaagctgggcccccagggaagaatgga
caggacgggtaccaaggccaggcaggcccagccggaacctctggacccccaggagctaat
ggagaaaagggtgtgaaaggtgatagaggaccccaaggagggcctggagacaaaggtgaa
ataggccacaccggaccccccggccaccccggtgctgctggtatcatggggaatcctggt
aacaacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggcaaggag
gggatgaagggaatccaggggccaccaggtctaccaggcttaatgggtcaaatgggcaaa
attggcaaagatggccgccaaggagaacaaggagaatctggtaaacaaggagagccagga
ccacagggacaacccggactcaggggaatgcctggcttcaagggtcacagaggagagcct
ggaccaccagggtcaaagggtgaagatgggaaggaaggccgtagcggaccggagggtaaa
cctggccaagacggtaatattggaccacttggaccagagggccttgctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagccaggagcccctggtactcct
ggtcccgctggagccaagggagaccctgggaacccaggattaccaggctttagtggtcca
aagggtcctttgggtcctactggtcctgtcggccccgagggaaaacagggtatgtcaggc
agagcaggagaacgtggagtcaaaggagagcggggggactcaggtgggaagggagataag
ggatctgttggagatccaggtatgcctggtaacccggggcccccaggccgtaagggccac
acagggatgatggggatgtccgggcccccaggagaggtgggacttaccgggcctcaggga
acacctggaaaccccggacaaccaggaccacgaggagagtcaacatcactggaaacaatg
agaaggctgatccaggaggaactagctaaagcgttagatgacaaaatggcgtacctgatg
gcccagatccagccggcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcgggcaaagacgggagccacggtcgccccggacccccaggggagcctggcatgccaggg
cagaatggaggagacggcataaggggacccatgggtcctaaaggtgagagaggatccaga
ggggacaagggagaaaacggagttggacagagaggagagactggaccatcaggtcctata
ggtccagcaggtatgccaggctatggtaaggacgggcagcccggggctactggagctcag
ggagaaccagggaatcctggcccccatggccagccaggccccagcggacccccaggacag
tgtgacccctcccagtgtgcctactacgctagtctgggatcacgaccccacaccaagaac
gtcaaggggacttaa
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