Oncorhynchus masou masou (cherry salmon): 135553971
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Entry
135553971 CDS
T10723
Symbol
casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135553971 (casc3)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135553971
NCBI-ProteinID:
XP_064842016
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Position
14:3684376..3699814
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AA seq
778 aa
AA seq
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MADRRRRRRRASQDSEEDDESGSGSESGKSLSPTNKPRVRDPEPVEAPAVRVVPENAAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEEEEEEEEVPPPAAGPKPTPASDTPAAEG
ELQEGGGKDEEGEKSTRKEVKCEDKGNLAGERQSGDGQESTEDSENKGSKPGQKLDDDQD
RNNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKSREEL
VAIYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWQDGDWERPVHTSWQQGGNPNSRSA
PSRALQQSGPPPSAAPNTQRSNNPPRPSSHPPPRGFQGNRPPQAHHRNDRNQESQRPGPK
AEPLQTRSLPPMDGEQGPRGRGNRGAHTERSPSVVVEEVRSEEDDERNTTTVTTSQSVYY
NRHYSGKGDRERDSAPPPRRQEQQRGGSAPLTDNQVTRDASPAPERPVEKKSYSLARRTR
TRATELGKQASLEEPASTVSSSALKSEPWHGPGQSQGDAGDNSQGTVLTGLDQDLTRLSL
AGPNWPQNPSSYLRAEMRGIPNSIHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSPEPA
PPMHIGVMEGHYYEPMSYQGPIYSHGDSPAPLPPQGILVQPEMHLPHPGHPGLHPHQSSG
PMPNPALYAAPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNTNYPYPAGATLPPMYNPPA
QSQVYGQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEDRSGKASQEVRS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacgtcgaaggaggcgcgcatcccaggacagcgaggaggacgatgaa
tctggttcgggatcagaaagtggaaagtccctttcgccaacgaataagccccgagtacgg
gaccctgaaccagtagaggcaccagctgttcgtgtggtgccggaaaacgcggctgaatcc
gagtgtgaaagtgaagatggtgtaggagaagctgtcctttctgactatgaaagcgcagat
cctgaggagaatggctcacattcagagggaggtgaggaggaggaggaggaggaagaggtc
cctccaccggctgctgggcccaaacccactcctgcttccgacacccctgctgcagagggg
gagctgcaggaaggagggggaaaggatgaggagggtgagaaaagtacgaggaaagaagtg
aagtgtgaagacaaaggcaacctggcaggggagcgtcaaagcggggatggacaggaaagc
acagaagactcagagaataaaggctctaaaccaggccagaagctggatgatgaccaggat
cgtaataacccagcctatatcccccgtaagggaatgttctttgagcacgacgtcagagga
aatgcacaggaggaggaacggcctaagggtcgtaacaggaagctgtggaaggatgagggt
cgctgggaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgaggagctg
gttgcgatctatggctatgacatccgcaacggaggtgtctccaatgagcggtcctataga
cagcgcaagcccagacacagcacctctccagtccgggacaagcgctggcaggacggagac
tgggagagacctgtccatacctcctggcagcaaggagggaaccccaacagccgtagcgcc
cccagccgtgccctgcagcagtctggtcctcccccctcagcagccccaaacacccagcgc
agcaacaacccccccaggccctcctcccaccccccaccccggggctttcagggcaaccgc
cctccccaggcccaccacaggaatgaccgaaaccaggagtcccaacggccaggccccaag
gccgagcccctccagacccggagtttaccgcccatggacggggaacaaggccccaggggc
cgggggaacagaggggcccatacagagcgcagcccttcggtcgtggtagaagaggtccgc
agcgaggaggatgacgagcgcaacacaactacagtgacaacgtcacagtccgtgtactac
aatcgccactacagtggcaagggagatcgcgaaagggactctgcgccaccgccgcgacga
caggagcagcagcgagggggatctgctcctctgacagacaaccaggttacccgcgatgcc
tccccggctccagagcgccccgtggagaagaagtcgtattccctagccaggagaactcgc
acccgggccactgagctgggcaagcaggcctctcttgaggagcctgcctccaccgtctct
tcctcggccctgaagagtgagccgtggcatggccccggtcagagtcagggggatgctgga
gacaacagccaggggacagtactcacagggttggaccaggacctgaccagactcagcctg
gccggaccgaactggccccagaacccatcttcgtatctacgcgctgagatgaggggcatc
cctaactctatacacatgggtggagcacctccacaatacagtaacatagaagagctggga
gctggtaaccgtgcaaagcggtactcgtcccagcgccagaggccaagcccggagcccgct
cctcctatgcacataggggtcatggagggccactactacgagcccatgtcttaccaagga
ccaatctattcccatggcgacagccccgcccccctcccaccccagggcattctggtccag
cctgagatgcacctcccccacccaggacacccaggtctacacccccaccagtcgagcggc
cccatgcccaacccggctctctacgctgctccccctgtctccatgtcccctggacagccc
cctccacagcagctgttggccccgccattctaccctccgccaggtgtcatgacctttggg
aacaccaactacccctacccggcaggagccaccctgccccccatgtacaaccccccggcc
cagtcgcaggtgtacggccagtcgcaggtgtacggtggggtgacgtactacgacccgatg
cagcagcaagcccagcccaaaccctcgcctccccggcgttcctcccagcccgtcaccgtc
aaacctcccccaccagaggaccggagtgggaaggccagtcaggaggtcagatcctag
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