Oncorhynchus masou masou (cherry salmon): 135554458
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Entry
135554458 CDS
T10723
Symbol
ddx42
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135554458 (ddx42)
Spliceosome [BR:
omm03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135554458 (ddx42)
Complex B
135554458 (ddx42)
Complex C
U2 SnRNP specific factors
135554458 (ddx42)
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Other DBs
NCBI-GeneID:
135554458
NCBI-ProteinID:
XP_064842850
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Position
14:complement(18431918..18438879)
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AA seq
937 aa
AA seq
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MNWSKGGPSGKRGFGFGGFSLGGGGGGGGKKEEXCVPQKSHTSFGGAGTAGGYGKNQQLP
AFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFQSGGGSDSEDDPLDA
FMAQVEVRPSSKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDE
DENIDYDSDGNPIAPITKKIIMPLPPMDHSEIDYPPFERNFYNEHEELLSLTGTEVFELR
HKLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGI
AKTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLR
SVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMG
FEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVE
IMPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSE
RNKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKG
VAYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGG
GLGYKERPGLGAESSERSGGAAMGNYEGYSKPTGAMGDRMSAMKSAFQSQYKNHFVAASG
MVPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAALGMGTKMAGFTS
AGSLSSVSDSQATAPQGNAAPPSPREGPRDRHVDDRSRHGDGHYRDRRDRSERHSGGGER
HSGGGERDRYGERDRHADRDRYGDKDRHGSSGRHGDSRNGEGSRRDRERDDCRGDRESGD
RAGSEGRGDRAEGKGDREEDSFAVPDPPKRKKSRWDN
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggttcggttttggaggattttcc
cttggtggtggtggaggaggaggaggaaagaaagaagaannctgcgtgcctcagaaatcc
cacacgtccttcggaggcgcagggacagctggaggttatggcaagaaccagcaactccct
gcattctacaagataggaacaaaaagagcaaattttgatgaagagaatgcgtattttgaa
gatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaactccccc
acacggcaacaattccagtctggagggggctcagacagtgaggatgatcctctggatgct
ttcatggcccaagtggaggtgagaccaagcagcaaagacatgaagaaactggaggaaaaa
gagaaggaaaagaaggttgaaaagggtatacgtgatgacattgaagaggaagatgaacaa
gaagcctacttccgctacatggcagagaatcccacagctgggctgaccgcagaggacgag
gatgagaacatagactacgacagtgatgggaatcccattgcccccatcactaagaagatc
atcatgcccctgcccccgatggaccactctgagattgactacccaccttttgagaggaac
ttctacaacgagcatgaggagcttctcagcctgacaggcaccgaggtgtttgagctgaga
cacaaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagctttgcc
cactttgggtttgacgagcagctgatgcatataatccgcaagtcggagtacactcagcca
acacctattcagtgccagggagttcctattgccctgagtgggcgtgacatgattggcatt
gcgaaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatg
gaccagaaggaactggagactggagaggggcctatcgcagtcatcgtgtgccccaccagg
gagctctgtcagcagatccatgcggagtgtaagcgttttgggaaagcctactccctgcgc
tcggtggcggtgtatggaggaggcagcatgtgggagcaggccaaggctcttcaggagggg
gcagagattgttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggccacc
tctctgcagagagtgacatacctggtgtttgatgaggcagatagaatgtttgatatgggc
tttgagtatcaagtgagatccattgccagccatgtccgacctgatcgacagactcttctg
ttcagcgccaccttccgtaagaagattgagaggctggctagagatatcctggtggacccc
atccgcgtggtgcagggagacatcggggaggccaatgaggatgtgacccaggtagtggag
atcatgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagtttacc
tcctctggctctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggccacc
aacctgacccaggagggccacagcctgggcctgctgcacggagacatggaccagagtgag
aggaacaaggtcatcgctgacttcaagaagaagagtctgcccgtgctggtggccaccgac
gtggcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggct
cgggacatcgacacacacacacaccgaattggccgaactggtcgtgctggagaaaagggt
gttgcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaac
ctggagggagccaatcaaagtgtctctaaggagctgatggacttggcaatgcagaatccc
tggttcaggaaatcacgcttcaagggtggcaaagggaagaagctaaacattggaggaggt
ggtctgggctacaaagagaggccaggattgggagctgaaagttctgagcgtagtggtggt
gctgccatgggtaactatgagggctacagcaagcctaccggagccatgggagaccgcatg
tcagcaatgaagtcagccttccagtctcagtataagaaccactttgtggcggcgtccggc
atggttcctaaactcaccactaagtccagtagctcttcaggctggaccagcgctggaagt
ctgagctccgtccccaccggggcccctgagggcccagaccggccccgtgggcccccctcc
ttagccatggcccctccagcagccctcggcatgggcaccaagatggcaggcttcaccagc
gctggctccctgagctctgtgtcagacagccaggccactgctcctcaggggaatgccgcc
ccaccctcacccagggaagggccccgtgacagacatgttgatgacaggagtcgccacgga
gatggacactatcgtgacaggagagacaggagcgagcggcacagtggtgggggagagcgg
cacagtggcgggggagagcgggaccgctatggggagcgggaccgccacgcagaccgcgac
agatacggggacaaggatcgccatggcagcagcgggcgccatggcgatagtcgtaatgga
gagggaagtagaagggatagagagcgagacgattgtagaggtgacagggagagtggagac
agggcagggagtgaaggaaggggggacagagctgaggggaaaggagaccgagaggaagac
agctttgcagtcccagatccaccaaaacgcaaaaagagtaggtgggacaactaa
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