Oncorhynchus masou masou (cherry salmon): 135555432
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Entry
135555432 CDS
T10723
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135555432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135555432
03009 Ribosome biogenesis [BR:
omm03009
]
135555432
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135555432
Spliceosome [BR:
omm03041
]
Complex A
U1 snRNP components
U1 related factors
135555432
Complex B
135555432
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-60S particles
Helicases
135555432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
135555432
NCBI-ProteinID:
XP_064843914
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All DBs
Position
15:complement(6840795..6846242)
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AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFY
QEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNM
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGG
HSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRDNDRGFDSGPKKVFGTNSQSGGYGASG
FDKSGNGFGGGYGSNGQSNYGASQAGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgccaggattttcagacagagatcgtggtagagatagaggatatggcagtggaccacct
cgttttggaggcggtggaagaggtggtggtggtggggggaagtttggtaatcccggtgat
cgactgcgcaagaagcactggaaccttgacgagctctctaaatttgaaaagaacttttac
caagagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtact
aaagcagttactgtgaaggggagggactgccctaatccaattatgaagttccatgaagcc
agttttccaacctacgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccg
atccaagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacag
acaggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccag
cctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctg
gctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtc
tgtgtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggag
atttgcattgctacacctggcaggcttattgacttcctggaggcaggaaagaccaacatg
cgcagatgcacttacctggtactggatgaggctgaccgaatgctcgacatgggtttcgaa
ccacaaatccgaaaaattgtggaccaaatcagacctgatcgacagacgctgatgtggagt
gccacttggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccag
atcaatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtt
tgcaatgatggcgagaaagaagacaaactcctccgccttctagaggagatcatgagtgag
aaggagaacaaaaccataatctttacagagaccaagaggagatgtgacgagatcactagg
aggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggag
agggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagac
gtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactacccc
aacaactctgaggactatatccaccgcattggcagaactgcccggagccaaaagactggc
acagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgctgtg
ctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggt
cattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcc
tccgggggcaggcgtgacttcagtagctttagggacagggacaacgatagaggttttgac
agtggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagtggc
tttgacaaaagcggcaatggttttggcggcggctacggcagcaacggccagtcaaactat
ggtgccagccaggccggggtgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcaacaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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