Oncorhynchus masou masou (cherry salmon): 135555903
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Entry
135555903 CDS
T10723
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135555903 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135555903 (xab2)
03041 Spliceosome [BR:
omm03041
]
135555903 (xab2)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135555903 (xab2)
Spliceosome [BR:
omm03041
]
Complex B
Other components
Prp19-related factors
135555903 (xab2)
Complex C
135555903 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
135555903
NCBI-ProteinID:
XP_064844781
LinkDB
All DBs
Position
15:22041376..22058732
Genome browser
AA seq
849 aa
AA seq
DB search
MPSLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGVKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVAQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCSKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPVKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQLLSAEAEQ
DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDGDEDQGPGEVQLEQKSVPTAV
FGGLKEGED
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccctctctaaatggaaaaccggacgtcatgtttgaggaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgctacatcgagttcaaa
cagaatggcgtcaagtcagtcctcaacatgatctatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcacggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatctggctggactactgccagttcctggtggctcagtgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctacccctgcctgagactgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcagcaagctggatgaagcagcagtgcgactggcagccgttgtcaac
gatgagagctttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggcaatcatccgt
ggaggcctcactcgtttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccattttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagatggggaaagatgaagaagaggacata
gacctggagctgcgtctggcccgctttgagcagctgatcgctcgcaggcccctcctgctg
aacagtgtgctgctcagacagaacccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctgtgaaggctacagggaaacccagctctctctgggtctctttcgccaagttctac
gaggagaacgagcagctggacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggggagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagccggtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtatgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactatgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcatacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctatgggggcaagaagctggagagggcccgggacctgtttgagcaagcgctggat
ggctgtccagccaagttcgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcacgccatggcggtgtacgaaagagccacgcaggcggtggacaac
acagagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggacga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcaa
acatggaaggagtttgagatccgccatgggaacgaagacactatccgggaaatgctgagg
atcaagcgtagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccggcaccatctcagatcttgccccgggccagatgggg
ctggatgatatgaagctgttggagcagcaggcccaactgctgtccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtcacgcagtgag
ctggctgaactggccaaacaagccaaccctgatgagattgatattgatgatgaggatggt
gatgaagaccagggccctggggaggtgcagctggaacagaagagcgtccccaccgctgtc
tttggagggctgaaagaaggagaagattga
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