Oncorhynchus masou masou (cherry salmon): 135556309
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Entry
135556309 CDS
T10723
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04010
MAPK signaling pathway
omm04020
Calcium signaling pathway
omm04144
Endocytosis
omm04510
Focal adhesion
omm04540
Gap junction
omm04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
135556309 (pdgfra)
04020 Calcium signaling pathway
135556309 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
135556309 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
135556309 (pdgfra)
04540 Gap junction
135556309 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
135556309 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
omm01001
]
135556309 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
omm04090
]
135556309 (pdgfra)
Enzymes [BR:
omm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
135556309 (pdgfra)
Protein kinases [BR:
omm01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
135556309 (pdgfra)
CD molecules [BR:
omm04090
]
Proteins
135556309 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Receptor_2B4
Shr-like_HID
Kinase-like
Motif
Other DBs
NCBI-GeneID:
135556309
NCBI-ProteinID:
XP_064845475
LinkDB
All DBs
Position
15:complement(45455439..45476510)
Genome browser
AA seq
1466 aa
AA seq
DB search
MDEMKTCLIIGVLLFGLLSVTCGLTPPTIVSTEDEFVLEPLSVFNISCTSKRSVAWVEPL
PVNTFVLPGYYTATLFIYNASVTHTGYYICKYQDEEGDEEDDEDNEAVIYVFVPDPKVPF
VPEEPGSMVVLVYPGETIIPCRVSDPRSPVVLKSAPSGVEVDAAYDNKIGFIGNLDAGLY
VCETIVNGVTTTSDIYTVKDNKLMEDFHVEVKASEKAVRLGEPFNITCVAPPGLPYQQQW
LHPMKQAVDAVQLKQARPDRVVYTLSIPAASSQDSGVYECSITNNFSGEIRANMVAVTVF
EENSFVMLDHSGIGTVEFVSMMEETEFTISIEAFPAPKVTWLKDGIAITENSYFLTKTRR
LAGNHYQSTLTLRQSLEKDSGNYTVVVLSSAYTDQFSFTLKVKESGPVLFQPASAPVLFP
QREEWIVPLHTPFTLTCRGEAELAWDTPVYLSEQTEEDNSGLFITTVTVENATAGHTGFY
TCFYKGGNSTEEGEDSSIYIYVPDPEVPFVPSLVPFGNHVLNGHDEMEIQCRVSDPGANV
TLVNADTQQAVPLAVYDSKRGAVGFFSAGTYVCKALVNGEEHLSEEYIVHGWAGGSELRV
ELKAQKTALLVGDTITVICVARGSEILEDHWKYPGKLADRGLKSVRENKRDQEIQYTLTV
PQASAKDSGIYVCSITDIISNENQTKKLAITVYERPFVSLRPAFSSQESADLDEVRQFQA
DIDSFPSAQVTWLKDGLPLNDVAAEITTSLRQVSETRYQSVLTLIRAKEEDSGNYTIRVQ
NGNQTHSHNFSLQVKVPAVIVDLMDLHHGSASGQSVVCIAGGMPTPKVEWFICKNIKHCA
NDSSEWVPLPTNNTEITVEAHIDQDNQLESQVIFGHLENTLAVRCLARNEMATVSREVKL
VSQDPHSELTVAAAALVLLVFVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVD
PMQLPYDSRWEFSRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSS
EKQALMSELKIMTHLGPHLNIVNLLGACTKSGPTYIITEYCFYGDLVNYLHKNRENFVSV
HPEKTKKDLDIFGINPADESSRSYVILSFESGKGDYMDMKQADTTQYVPMLEMSDASKYS
DIQRSEYNHPPSQKGDSEMDNMLSGDGNEGLSTTDLLSFTYQVARGMEFLSSKNCVHRDL
AARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVW
SYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPTDVYEMMMKCWNSEPEK
RPSFFSLSESVASLLPSGYKRCFERVNHEFLKSDHPAVTRVQVENDDTYVGITYKNQGKS
KDRESGFDEQRLSSDSGYIIPLPDLDPLSDDEYCKRNRHSSQTSEESAIESGSSSTLAKR
EGETLEDITLLDEMCLDSELVEDSFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgaagacatgtctcatcattggggtgctcttgtttggattgttatcggtt
acctgcggactgacgccaccgaccattgtatcaactgaagatgagtttgttctcgagcca
ctctccgttttcaacatcagctgcactagtaaaaggagcgttgcttgggtcgaaccctta
ccggtcaacacattcgttttgcctggatattacacggccacgctcttcatctataacgct
tccgtgacacacaccggatattacatctgcaaataccaagacgaagagggcgatgaagag
gatgatgaagacaatgaggcagtcatatacgtttttgtcccagatcccaaggttccgttc
gtgcccgaggagccaggtagcatggtagttctagtctatcctggtgaaaccatcatccca
tgcagggtgtcagaccctcgatccccagtggtcctaaagagtgctcccagtggagtagag
gtggacgctgcttatgacaacaagatcggcttcattggcaacctggacgctggactctac
gtctgtgagacaatcgtgaacggcgtgacaacaaccagtgacatctacaccgtgaaggac
aacaaactgatggaggacttccatgtggaggtgaaggccagcgagaaggcggtgagactg
ggggaacccttcaacatcacctgtgtggcacctccaggactgccctaccaacagcagtgg
cttcaccctatgaaacaggctgtggatgcagtccagttgaagcaggctcggcctgataga
gtggtctacaccctcagtatcccagcagcctcctctcaggacagtggggtgtatgagtgc
tctatcaccaacaacttcagtggagagatcagagccaacatggtggctgtcactgtcttc
gaggagaactcctttgtgatgttggaccacagtgggattggaacggtggagtttgtcagt
atgatggaggagacagagttcaccatcagtattgaagccttccctgctcctaaagtcacc
tggctgaaagacggtatcgccatcactgagaacagctacttcctcaccaagaccagacgt
ctggcgggcaaccactatcagagcactctgactcttcggcagtcactagagaaggacagt
gggaattacaccgttgtggtcctcagcagcgcttacactgaccagttctccttcaccctc
aaagtgaaagaatcaggcccagtactgttccagccagcctcagcgccagtgctgttccct
cagagagaggagtggattgttcccctccacacccccttcaccctgacctgcaggggcgag
gccgagctggcctgggacacgcccgtctacctatcagagcagaccgaggaggacaacagc
ggcctgttcatcaccacggttaccgtagagaacgcgacagcagggcacactggcttctac
acctgcttctacaaaggagggaactccactgaggaaggagaggacagcagcatctacata
tatgtgccagatccagaggtgcccttcgtaccctcgctggtgccctttggcaaccacgtc
ctgaatggtcatgatgagatggagatccagtgtcgcgtgtcagaccccggtgccaatgtg
accctggtcaacgctgatacccagcaggccgtgcccttggcggtctacgacagcaagagg
ggtgccgtgggcttcttcagcgcaggaacctacgtctgtaaggccctcgtcaacggagag
gagcacctcagtgaggagtacatcgtccacggctgggcaggggggtcggagctgcgtgtg
gagctgaaggcccagaagacagccctcttggtgggagacaccatcactgtcatttgtgtg
gcccgggggtctgagatcctggaagaccactggaagtaccctggaaaactggcggaccgg
ggcttgaagtcggtgcgtgagaataagagggaccaggagatccagtacacattgactgtc
ccccaggcctcagccaaagacagcggcatctatgtctgctccatcactgacatcatcagc
aacgagaaccagaccaagaagctggccatcactgtctatgagaggccattcgtgtcgctg
cgcccggcgttcagttcacaggagtcagcagatttggatgaggtcagacagttccaggct
gacattgactcctttcccagcgctcaggtcacatggctcaaagatggcctccctctcaac
gacgtggcggctgagataaccaccagcctccggcaggtcagcgagaccaggtaccagagt
gttctgaccctgattcgggccaaagaggaggacagtgggaactacaccatcagagtgcag
aacgggaaccagacccacagccacaacttcagcctgcaggtcaaagtgcctgcagtcatt
gtggacctgatggacctccaccatggctcagcctcaggccagtctgtggtgtgtatcgct
ggaggcatgcccactcctaaggtggagtggttcatctgcaagaacatcaaacactgtgcc
aacgactcgtctgagtgggtgcccctgcctaccaacaacacagagatcactgtggaagcg
cacatcgaccaggacaaccagctggagagtcaggtgatctttgggcatctggagaacacc
ttggctgttcgctgcctggccaggaacgagatggccactgtcagcagggaggtcaaactg
gtgtcacaagaccctcactcagagctgactgtagctgctgctgccctggtgctgctggtc
tttgtcatcatctcactcattgttctggtcattatctggaaacagaagcctcgctatgag
atccgttggagggtgatagagtcagtgagccctgatggtcatgagtacatctacgtggac
cccatgcagctgccctatgactccagatgggagttctctcgcgatgggctcgtactggga
cgtatcctgggctctggggcgtttgggaaggtggtggagggaactgcatacggactcagc
cgctcccagcccgtcatgaaggtggccgtgaagatgctgaaacccacggcccgctccagt
gagaaacaggccctgatgtcagagctgaagattatgactcacctgggccctcacctcaac
atcgtcaacctgcttggggcctgtaccaagtcaggccccacctacatcatcactgagtac
tgcttctatggagaccttgtcaactacctgcacaagaacagagagaacttcgtcagcgtg
cacccagagaagaccaagaaagacctggacatctttggcatcaaccctgcagatgagagc
agcaggagctatgtgatcctgtcatttgagagtggtaaaggggactacatggacatgaag
caggcagacaccacgcagtacgtgcccatgctggagatgagtgatgcctccaagtactcc
gacatccagaggtccgaatacaaccacccgccatcacagaagggtgatagtgagatggac
aacatgctgtcaggggatggtaacgagggcctcagcaccacagacctgctcagcttcacc
taccaggtggccagaggcatggagttcctatcctctaagaactgtgtgcatcgggacctg
gctgccaggaatgtcctgctctcgcaggggaagatagtaaagatctgtgactttggcctg
gccagagacatcatgcacgacaacaactacgtctccaaaggcagcaccttcctgccagtg
aagtggatggctccggagagtatctttgacaacatgtacaccaccctcagtgacgtctgg
tcctacggcatcctcctctgggagatcttctctctaggtggcaccccatacccagggatg
gtagtggactccagcttctacaacaagatcaagagtggctacaggatggccaaacctgag
catgcccccactgatgtgtatgagatgatgatgaagtgttggaatagtgagcctgagaag
aggccttccttcttcagcctgagtgagagcgtggcctcactgctgccttccggctacaag
aggtgtttcgagagggtgaaccatgagttcctgaagagtgaccacccggcagtgaccagg
gtccaggtggagaatgacgacacctacgttgggatcacctataagaaccagggcaagtcg
aaagacagggagagtggcttcgacgagcagcgcctcagctctgacagtggttacatcatc
ccccttcctgacctggaccccctgtctgatgacgagtactgcaagaggaatcgccacagc
tctcagacgtctgaggagagtgccatagagtcgggctccagctccacgctggccaagaga
gaaggagagaccctggaggacatcaccctattggatgagatgtgtctggactcggagctg
gtggaggacagctttctgtga
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integrated database retrieval system
