Oncorhynchus masou masou (cherry salmon): 135557426
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Entry
135557426 CDS
T10723
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03008
Ribosome biogenesis in eukaryotes
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
135557426
09123 Folding, sorting and degradation
03018 RNA degradation
135557426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omm03021
]
135557426
03019 Messenger RNA biogenesis [BR:
omm03019
]
135557426
03009 Ribosome biogenesis [BR:
omm03009
]
135557426
03016 Transfer RNA biogenesis [BR:
omm03016
]
135557426
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135557426
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
135557426
Ribosome biogenesis [BR:
omm03009
]
Eukaryotic type
Pre-60S particles
RNases
135557426
Transfer RNA biogenesis [BR:
omm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
135557426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
135557426
NCBI-ProteinID:
XP_064846753
LinkDB
All DBs
Position
16:9144090..9174352
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AA seq
956 aa
AA seq
DB search
MGVPAFFRWLSRKYSTIVVHCTEERSKECNGVRIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMELVEEKSRIREEILGRGGYLPPDEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLSNDPGWRNITVILSDASVPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCAMCGQKGHEIKDCQGVAREKQGEHDEFADAMPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERTVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYITENGFVKLESVELIMQAIGVAEDNIFKKRKEDDEGFKRRNKE
KKKRMKAQQQGPSYLTSGQFAPQALGGRGRPEVVQNARHQAFDMRMQGRDQHNRAGTSDG
QDGRGVKRKAEDSDSEPDPEDNVRLWEDGWKQRYYKTKFDVDATDDDFRKKVVMSYVEGL
CWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFELGTKPFKPLEQLMGVFPAAS
GNFLPETWRSLMSNPESSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVY
PNLSPEENKRNSLGSDMLFVGKSHSICDFIQELYRGESHEGTEMPAELCHGIQGILNLDG
DPILPDKPVESPIPMLRDIAQNSAIGVKYKDPQFGETFVFKAVILQGAKIPAKVLKPGDW
ERGNRGRGNWRPQLGFNSNRQQVHLDQSAFRALGHSINRQQQGGGQYSNAPPPGNYHQGN
YSRPPHSGGGHFSHSRQQGLLGAPPPFNPVQQYPRQQYSGSGGHGWDRSMQSQGAAYQQN
MQRGGHGGGQGQGGYHQQRGQDDRRGDRRDDRGGQPGYSAGRNYPLPPPARRYNWS
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcattttttcgttggttgagtcggaaatattctacgattgttgtccat
tgtactgaggagaggtccaaggaatgcaacggtgtacggattcctgttgataccagcaaa
ccgaatccaaatgaagtggagtttgacaatttgtacttggacatgaatgggatcattcac
ccctgtacacatcctgaagacaaggctgcccccaaaaatgaagatgaaatgatggttgcc
atctttgaatacatggatcgtctcttcaacattgtgcggcccagaagggttctttacatg
gctattgatggagtggcccctcgtgccaaaatgaaccagcagcggtccaggcgattccgc
gcctccaaggaaggaatggaactggttgaggagaaatcccgcatccgagaggagatcctc
gggagaggagggtatcttccacctgatgaaatcaaggagagatttgacagtaactgtatc
accccaggcacagagttcatggacaaccttgcaaagtgtctccgttactacattgcagac
agactcagtaatgaccctggatggcgtaacattacagtcatattgtctgacgccagtgtc
cctggtgagggggagcataagatcatggactatatcaggcgacagagagctcagcctcac
catgaccccaacacacaccactgtctttgtggagctgacgctgaccttatcatgctgggc
cttgccactcacgagcccaatttcaccatcatccgagaggagttcaagcccaaccagccc
aggccctgtgctatgtgtggacagaaaggccatgagatcaaggactgccagggagtggcc
agggagaaacagggagagcatgatgagtttgcagacgctatgccggcttctgaacaggag
ttcatattcatcaggctgtgcgttttgcgtgagtacctggagcgagagttgacaatggcc
agtctgccctttccctttgactttgagaggactgtcgacgactgggtcttcatgtgcttc
ttcgttggcaacgatttcctgcctcatttaccgtccttagagattagagagggtgcgata
gatcgactggtgggcatctacaaagacgttgtgcacaagactgggggctacatcacagag
aatggctttgtcaagttggagagtgttgagttgatcatgcaggcaatcggtgtggctgag
gacaacatcttcaagaagcgcaaagaggatgatgagggattcaagcgaaggaataaggag
aaaaagaagaggatgaaggctcagcagcagggcccatcctacctgaccagcggtcagttt
gccccccaggcccttggcggcagaggcagacctgaggtggttcagaatgcccggcaccaa
gcctttgatatgcggatgcagggcagggaccagcacaacagggcagggaccagtgatggg
caggatggccggggtgtgaagcggaaagccgaggacagcgacagcgaaccagatcctgaa
gataacgtcaggttgtgggaggatggctggaagcagcgatactacaagaccaagtttgac
gttgacgcgactgatgatgattttcgcaaaaaggtggtcatgtcctacgtggagggtctc
tgctgggtcctgaggtactactaccaggggtgcgcatcctggaagtggtacttcccgttc
cactacgccccgttcgcctcagacttcaaagacatcaaaggcatgttcaccgacttcgag
cttgggaccaagccgttcaagcccctggagcagctgatgggtgttttccctgctgcaagt
ggaaatttcctgcctgaaacatggcggtcactcatgagcaatccagagtcctcaatcatt
gacttctaccctgacgactttgccattgacctcaatggaaagaagtatgcttggcaaggc
gttgcattgcttcccttcgtggatgagcgccgtctcagggcagccctggctgaagtctac
ccaaacctctctccagaggaaaacaagaggaacagccttggcagtgatatgctgtttgtg
gggaagtcccattctatatgtgacttcatccaggaactgtaccgtggagaatctcacgag
ggcaccgagatgccggcggaactatgccatggaattcaaggtatattaaatcttgacgga
gaccctatcctaccagataaaccagtggagtctcccatccccatgctacgggacattgca
cagaacagtgccattggagtgaaatataaggacccacagtttggagagacctttgtgttc
aaggctgtcattcttcagggagcaaagattcctgccaaggtgctgaagcctggagactgg
gagaggggtaaccgtggtaggggtaactggaggccccaactgggcttcaactccaaccgg
cagcaggtccatctggaccagtcggcattcagggccctgggtcacagcattaaccgacag
cagcagggaggtgggcagtacagcaacgctccaccccctggcaactaccaccaggggaac
tacagcaggcccccccacagtggtggtggtcacttctcacattccaggcagcagggtctt
ctaggggcacctcccccattcaatcctgtacagcaatatccaaggcagcagtatagtggt
agtggtgggcacggctgggaccggtcgatgcagtcccagggagctgcctaccagcagaac
atgcagagaggaggccatggaggggggcagggtcagggtggctaccaccaacaacgtggt
caggatgaccgtagaggagaccgcagagacgaccgtggaggacaaccgggatacagcgct
ggacggaattaccccttgccacccccagcaagacgatacaattggagttaa
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