Oncorhynchus masou masou (cherry salmon): 135557498
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Entry
135557498 CDS
T10723
Name
(RefSeq) collagen alpha-1(X) chain-like isoform X1
KO
K19479
collagen type X alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
135557498
NCBI-ProteinID:
XP_064846868
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Position
16:13921088..13927315
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AA seq
661 aa
AA seq
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MDLRVTSVLLLLVALAVATPERYYHVQKVAKQQQHYPTKSHVQTVSGEPGIPGSPGEPGP
MGPPGPPGNNGVGHPGQQGPPGAPGPAGYSAAGKPGTPGGPGKPGSNGMPGEKGHTGAPG
AMGPRGSPGSPGSPGPAGYSSAGKPGPHGLPGGMGPRGESGLKGHPGIPGLQGQKGERGV
GIPGAPGANGQVGPMGPSGMPGQPGVGKSGATGYPGEPGKSGTPGRDGAPGAMGQPGPKG
HNGNPGVGAPGKSGENGSPGMPGNMGPKGPQGHAGQPGAPGIPGVGKPGANGMTGDRGSP
GTSGTTGQKGEPGPTGYTGATGATGLMGPAGPQGARGFQGEPGVQGSKGDVGMLGAPGAK
GTKGDQGHQGYAGKAGIPGAAGPPGATGATGHQGNKGAQGHAGSPGQPGSNGLTGTKGHP
GTPGGPGKPGESGIPGTRGPVGPSGPAGQAGLRGHAGLPGAPGPAGQMAKGMSGPMGPPG
APGSRGNDGNPGAMGPPGPPGPPGEMVYHHEKSMPIKSHEIMMPHEMMKAPMSAFSAVLT
VAYPSAGSPVPFNQIIYNGEQHYDPQTGIFSCQVPGLYYFSYHMHVNGANALVALYKNGE
PIMFSYDEYNKGFLDQLSGSTVLMLNAHDQVYIQVPDEETNGVFAADNVHCSFSGFLIAS
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacctcagagtgacaagcgttctcctcctcctggtggccttggccgtggcaacacca
gagagatactaccatgtacagaaagtagccaagcagcagcagcattatcctaccaagagc
catgtccaaactgtttcaggtgagccaggtattcccggatcccctggtgagccaggacct
atgggcccccctgggcctcctggcaataacggcgtgggacatcctggacaacagggccca
cccggggcccccggacccgctggctactccgcagctggcaagcctggcactccaggtggt
cctgggaaaccaggtagtaacggaatgcccggtgagaagggccatactggcgcacctgga
gccatgggtccaagaggatcacccggttcccctggaagcccaggacctgctggatactct
tctgctggcaaacctggcccacacggtctgcccggaggcatggggccaaggggtgagagt
ggacttaaagggcacccaggtatccctggtctgcaaggacaaaagggagagaggggagta
ggtattcctggggcaccaggtgcaaacggccaagtgggcccaatgggaccctctggtatg
ccagggcaacccggagttggtaagtctggtgccactggataccctggggagcctgggaag
tcaggtactccaggtagggatggagctccaggagctatgggtcagccagggccaaagggc
cacaatggaaaccctggggtaggagcgccaggaaaatcaggtgagaatggcagtccaggt
atgcctggaaatatgggacctaaaggtcctcagggacatgccggacaaccaggtgcacct
ggcataccaggagttggtaaaccaggagctaatggcatgacaggtgacagaggatccccc
ggtacatcaggaaccacaggtcagaaaggagagccagggccaacaggttacactggggca
acaggtgctactggccttatgggtccagctgggccacagggtgctagaggattccaggga
gaaccaggtgtgcagggatctaaaggagatgtcggcatgctgggagctccaggggcaaag
ggaaccaagggggatcagggacatcagggttatgcagggaaggcaggtatccccggggca
gcagggcctcctggtgcaaccggcgctacaggacatcagggtaacaagggagctcagggc
catgctggctctcctggtcagccaggttcaaatgggcttacaggaacaaagggacaccca
ggcacacctggaggcccagggaaaccaggtgagagcggcatcccagggacaagaggacca
gtggggccttcaggtccagcaggtcaagcaggtcttagaggtcacgcaggtcttcccggc
gcacccggcccagctggccagatggccaagggaatgtctggtcctatgggtccacctgga
gctcctggttccagaggtaacgatggtaacccaggtgctatgggacctcctggcccacct
ggtccccctggtgagatggtctaccatcacgagaagagcatgcccatcaagtcccatgag
attatgatgcctcatgagatgatgaaggcccctatgtccgccttcagcgcggttctgacg
gtggcttacccatcagcaggttcacccgttccattcaaccagattatttacaatggggag
cagcactatgacccccagactggcatcttctcctgccaggtaccaggtctctactacttc
tcctaccatatgcatgttaacggtgctaatgcattggtggcactgtacaaaaatggtgag
ccaatcatgttctcatacgatgagtacaacaagggcttcttggatcagttgtctggcagc
actgtacttatgctgaatgcccatgaccaagtctacattcaggtccctgatgaggagacc
aatggtgtcttcgctgccgacaatgttcactgctctttctctgggttcctgattgcctca
acgtga
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