Oncorhynchus masou masou (cherry salmon): 135557695
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Entry
135557695 CDS
T10723
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm00100
Steroid biosynthesis
omm01100
Metabolic pathways
Module
omm_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
135557695 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
omm01006
]
135557695 (fdft1)
Enzymes [BR:
omm01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
135557695 (fdft1)
Prenyltransferases [BR:
omm01006
]
Terpene biosynthesis
Squalene/phytoene synthase
135557695 (fdft1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
GBP_C
Motif
Other DBs
NCBI-GeneID:
135557695
NCBI-ProteinID:
XP_064847286
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All DBs
Position
16:22944034..22957435
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AA seq
458 aa
AA seq
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MAGACCKCPVSLTVFKRSLCVTPRSPGPASRSLLSGGRLGERGVQEGCWAARPSALRTVG
SYRHPVFLCFSCQESMSESLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTIPLEKKVPMLNDFHTYLYQANWCFTESHEKDRRVLEDFPTISLEFRNLGQAYQ
DVISDICHRMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSQLFSASQLEDPEVGKD
TELANSMGLFLQKTNIIRDYLEDIQVARAFWPQEAWSQFACRLEDLAESDQLTSALSCLN
LLVTDALRHVPDVITYLARLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQ
AVTLMMQATNMGAVQSIMAQYSQEMLQRVSLTDPSRDKTLFILGVIQERTLSQATLASRT
AHLSPMYLSAAMILAALSWQYLSTTAGQPPGTADMQGH
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtccggtttctctcacggtgttcaagcgctctctctgc
gtcaccccgcggagccctggacccgcttcacggtcccttctctccgggggacggctgggc
gagaggggcgtgcaggagggatgttgggccgcccgccccagtgctttgcggacagtaggc
tcttaccgacaccccgtgtttctctgtttctcttgccaggaatccatgagtgagagcctg
cggacatgctacctctatctgaaccagaccagtcgcagtttcgccgctgttatccaggcg
ctagacggagagttacgacatgcggtgtgtatcttctacctggtcctacgtgcccttgac
acggtggaggatgatatgaccatccccctggagaagaaggtgcccatgctgaatgacttc
cacacgtacctttaccaggccaactggtgcttcactgagagccacgagaaggacaggcgg
gtcctggaggacttccccacgatttccttggagttcaggaacctgggtcaggcataccag
gatgtgatctcggacatctgccaccgcatgggagttggaatggctgagtttctggagaag
aaagtgggctccatgaaggagtgggaccagtactgtcactatgtggcagggctggtgggt
ataggcctgtcccagctgttctctgcctcccagctggaggaccccgaggtgggcaaagac
acagagctggccaactccatgggcctgttcctccagaagaccaacatcatcagagactac
ctggaggatatacaggtggcaagggccttctggccacaagaggcatggagtcagtttgcg
tgtcgtctggaggacctggcagagtctgaccagctgacctcagccctgtcctgtctcaac
ctgctggtgacagacgccctgcgccacgtccctgatgtcatcacctatctggcacgccta
cgcaaccagagcgtcttcaacttctgcgccataccacaggtgatggcgatagcgaccctc
tcagcctgttacaacaaccctcaagtatttcagggcgtggtgaaaatcaggaagggtcag
gccgtcaccctcatgatgcaagccaccaacatgggtgctgtgcaaagcatcatggcccaa
tacagccaggagatgctacagagggtgtccttgacagatccatcccgggacaaaaccctg
tttatcctgggtgtgatccaggagaggactctctcccaagccaccctggcctcaaggact
gcccacctctcccccatgtacctctccgctgccatgatcctcgccgccctcagctggcag
tacctaagcactacagccggacaacctcccggcactgctgacatgcagggccattga
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