Oncorhynchus masou masou (cherry salmon): 135557905
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Entry
135557905 CDS
T10723
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135557905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135557905
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135557905
U7-dependent histone pre-mRNA processing factors
135557905
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
135557905
NCBI-ProteinID:
XP_064847670
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Position
16:35410740..35424206
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AA seq
796 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEAAKKLEQEKEVDVDSS
DESDMEDDLELPAVVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMANGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGMVKGEKGT
GEEVVEDSELAMDVTPADNATTDHSVVAQQRAMKTLFGEDVRELSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCD
DYYKIRELLYQQYAVV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctattatcaaactgactgctgtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagagcttc
tccatggacatcattgattccatgaaaaggtatgtccaccaggttgatgcggtgctcctc
tcccatcctgaccccctgcacctgggggccctgccctatgctgtgggcaagctgggccta
aactgccccatatatgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcgcgcaacaacactgaggacttcaacctgttcaccctggatgatgtggac
tgcgctttcgacaaaatccagcagctgaagtactcccagattgtcaatctgaaagggaaa
ggacatggtctgtccatcactccacttcctgctggtcacatgatcggagggaccatctgg
aagattgtgaaggatggggaggaggagattgtttacgcggtggacttcaaccacaaaaga
gagatccacctgaatgggtgtacgttggagtcggtgagtcgtccctctcttctcatcaca
gactcgttcaacgctacatacgtgcagccgcgtcgcaagcaaagggacgagcagctcctt
accaatgtaatggagaccctacgaggcgacggcaacgtgctgattgcggtggatacggca
ggccgtgtactggagctggctcagctgctggaccagatctggaggacaaaggatgccggg
ctgggggtctactctctggccctgctcaacaacgtcagctacaacgtggtggagttctcc
aagtctcaggtggagtggatgagtgacaagctgatgcgctgcttcgaagacaagcgcaac
aaccccttccagttccgtcacctgtccctgtgccacagcctggccgacctggcccgcgtg
cccagccccaaggtggtgctctgcagtcagcccgacctggagtctggcttctcccgcgag
ctcttcatccaatggtgtcaggacgccaagaactctgtgatccttacctaccgtaccacg
cccggcaccctgggccgctacctcatcgacaaccccggggagaagatgctggacctggag
attaggaaacgggtgaagctggaaggcagagagctggaagaatacctagagaaagagaga
atgaagaaggaagctgccaaaaaacttgaacaagaaaaagaggtggacgtggactcgagt
gatgagagcgacatggaggatgacctggagctgccggcggtggtgaaaaccaaacaccac
gatctcatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcttaccccatgttccccacccacgaggagagggtcaaatgggatgagtacggagagatc
atcagaccggaggatttcctggtaccagagctccaggccactgaggaggagaagaacaag
ctggagtcgggcatggccaacggggacgaacccatggaccaggactcctcatccaaagta
cccaccaagtgtacctccactacggagaacctagagatcaaagccagggtgacttatatc
gactacgagggccgctcagacggcgactccatcaagaagatcattaaccaaatgaaacca
cggcagctggtgatcgtgcacggcccccccgaggccagcctggacctggccgagtcctgc
aaggccttcaccaaggacatcaaggtctacacgcccaagctgcaggagactgtggacgcc
accagtgagacacacatttaccaggtgcggttgaaagactcactggtgagctcgctgcag
ttctgccgcgccaaggacacagagctggcgtggatcgatggcgtactggacatgcgcgtg
gtcaaggtggacacaggtgtgctgcctgaggagggcatggtaaaaggagagaagggaact
ggcgaggaggttgtggaagacagtgagctggccatggacgtgacccctgctgacaatgcc
accacagaccatagcgtggtggcgcagcagcgcgccatgaagacgttgtttggcgaggat
gtgcgcgagctgtcggaggagagtgatgtcatccctaccctggagcctctgcctgcccac
gagatcccaggccaccagtcagtgtttatcaacgagccgcgcctgtccgacttcaagcag
gtgctgctgagggaaggcatccaggctgagtttgtgggaggcgtgctggtgtgcaacaac
atggtggccgtccgcaggacggaggcagggcgcatcggcctggaaggatgcctgtgtgat
gactattataagatccgtgagctgctgtatcagcagtatgctgtggtgtag
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