Oncorhynchus masou masou (cherry salmon): 135558005
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Entry
135558005 CDS
T10723
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135558005 (tbpl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135558005 (tbpl1)
03021 Transcription machinery [BR:
omm03021
]
135558005 (tbpl1)
Transcription factors [BR:
omm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
135558005 (tbpl1)
Transcription machinery [BR:
omm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
135558005 (tbpl1)
RNA polymerase III system
TFIIIB
135558005 (tbpl1)
RNA polymerase I system
SL1/TIF-1B
135558005 (tbpl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
135558005
NCBI-ProteinID:
XP_064847839
LinkDB
All DBs
Position
16:45419694..45447782
Genome browser
AA seq
187 aa
AA seq
DB search
MEPSNDVALDIIITNVVAVFRTRCHLNLRTIALEGVNVIYKPEYGKVLMKLRKPRITASI
WSSGKIICTGATSEDEAKQGARRLARTLQKLGFKVRFSEFKVVNVLAVCSMPFAIRLIDF
TKNNRPIASYEPELHPAATYRIKTLKATVQVFSTGSLTITGPNVQAVATAVEHIYPMLLE
CQKPLRK
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atggagcccagtaatgatgtagcgttggatatcattatcaccaatgtggtggctgtattc
aggacacgctgccacctcaacctgcgcaccatcgctctggagggggtcaacgtaatctat
aaacctgaatatgggaaagtcctgatgaaactccgcaaacccaggatcaccgcttccatc
tggtcttcagggaaaatcatctgtactggcgcaaccagcgaggatgaggctaagcaggga
gcccggaggttagcccgcaccctgcaaaaactgggcttcaaggtgaggttctcagagttc
aaggtggtgaatgtcctggcagtgtgctccatgcccttcgccatccgactcatcgacttc
accaagaacaaccggcccatcgccagctatgagccagagctccaccccgctgccacctac
aggatcaaaacccttaaggccaccgtccaggtcttctctaccggcagccttaccatcaca
ggaccaaatgtgcaggctgtagccacggctgtagagcacatctaccccatgctgttagag
tgtcagaaacccctccgcaaataa
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