Oncorhynchus masou masou (cherry salmon): 135558013
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Entry
135558013 CDS
T10723
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omm03041
]
135558013 (ddx1)
03016 Transfer RNA biogenesis [BR:
omm03016
]
135558013 (ddx1)
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135558013 (ddx1)
Spliceosome [BR:
omm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135558013 (ddx1)
Transfer RNA biogenesis [BR:
omm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135558013 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
135558013
NCBI-ProteinID:
XP_064847851
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All DBs
Position
16:complement(46068624..46126057)
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AA seq
741 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRTAVKTGGAVFNKWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKAITKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTMGCYLDLDNGLLSFSKNGTDLGLAFEIPALLKNQPFFASCVLKNAELKF
NFGAEEFKNPPKTGFVAVDQASEGHVVKSSQTGSVKVSEVKSASCGPKALIVEPSKELAE
QTLNNVNQCKRYVDNPKLRDLLIIGGVPARDQLAVLEQGVDIVVGTPGRLDDLISTGKLT
LSQVRFLVLDECDGLLTAGYTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKHDRSWERLDRKNHILTDEVHAKDNTRPGA
NSSEMWSEAIKILKGEYTIRAIREHNMDQAIIFCRTKIDCDNMEQYFIVQGGGPDKKGHQ
LSCVCLHGDRKPNERKTNLDRFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNY
VHRIGRVGRAERMGLAISLVAMEKEKVWYHTCANRGRGCHNTRLKEEGGCTIWYNEKELL
SDVEEHLKCTITQCDPDIKVPVDDFDGKVTYGKRRAAAGGNYSGHVAALAPTVQELANLE
REAQTSFLHLGYLPNQLFKAF
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggcgttatgcctgagatcgcccaagcagtcgaggagatg
gactggctccttcccacagacatccaggcagagtctattccgttgatcctggggggagga
gatgtcctcatggcggcagagactgggagtggtaagaccggggccttcagtatcccagtg
atccagatagtgtatgagactctgaaggaccagcaggaggggaagaaggggagaactgct
gtgaagactggtggagcagtcttcaacaaatggcagatgaacccatatgacagaagcaca
gctttcgccattggaccagacggactgtgttgtcaaagcagggagtttaaggaatggcat
ggctgtcgctctaccaaagccatcaccaaggggaagtactactatgaggtatcatgtcat
gaccagggcctgtgtaggatcggctggtctaccagccaggcagctttggacttaggtacc
gataaatatggctttggattcggaggaactgggaagaaatctcacaacaaacagtttgac
agttatggagaggagttcaccatgcatgacaccatgggatgttacctggatctagacaac
ggactcctctccttctccaaaaacggtactgacctgggcttggcgtttgagatcccagct
cttctgaagaaccagcccttctttgcttcctgtgttctcaagaatgcagagctgaagttt
aactttggtgcggaggagtttaagaatcctcccaagacgggcttcgtagcggtggaccaa
gcttctgagggacatgtggtcaaatccagccagacaggcagtgttaaggtgtcggaggtg
aagtcggcttcctgtgggcccaaagctctgatcgttgagccgtctaaagagcttgctgaa
cagaccctcaacaacgttaaccagtgtaagagatatgtggacaatcccaagctcagagat
cttctgatcatcggaggggttcctgctagagaccagctggctgtactggaacaaggggtg
gacatcgtggttggaacaccaggtcgtctcgatgacctcatctctacggggaaactcacc
ttgtctcaagtccgcttcctggtcctcgatgagtgtgacggtctccttactgcgggctac
accgacttcatcatgagaatctacaaccagattcctcaagtcacctcggacggcaagaga
ctgcaggtcatcgtctgctcagcaacgctccactccttcgacgtgaagaagctgtcggag
aagatcatgcacttccccacctgggtggacctgaagggagaggattctgtccctgagacc
gtacatcacgtggtcgtacctgttaaccctaaacacgaccgcagctgggaacgcctcgac
cgcaagaaccacatcctgactgatgaggtccatgctaaagacaacaccagaccaggagcc
aacagctcagagatgtggtctgaggccatcaagatcttgaagggggagtacaccatcaga
gccatcagggaacacaacatggaccaggccatcatcttctgtcggaccaagatcgactgt
gacaacatggagcagtacttcatcgtacagggaggaggtccagataaaaaaggccaccag
ctttcctgcgtctgtctccatggtgaccggaagcccaacgaacgcaagaccaatctggac
cgattcaagaaacaggaagtgaagtttttgatctgtacagacgtggcggccaggggcatc
gacatccacggagtcccctatgtgatcaacgtgactctgccagatgagaagcagaactac
gtccatcgcatcggcagagtggggagagcagagaggatggggttggccatctctctcgtt
gccatggagaaggagaaggtgtggtatcatacgtgtgctaaccggggcagagggtgtcac
aacaccaggctgaaggaggagggaggatgtaccatctggtacaacgagaaggagctgctg
tccgacgtagaggaacatttaaaatgtaccatcacccagtgtgacccagacatcaaggtt
cctgtggacgactttgacggcaaggtcacctacggcaagcgcagagcagcagcaggtggt
aactatagtggtcatgtggctgccttggctcctacagttcaggaactggccaatctggag
agagaagctcagacctccttccttcacctggggtacctgcccaaccagctgttcaaagcc
ttctga
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