Oncorhynchus masou masou (cherry salmon): 135558096
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Entry
135558096 CDS
T10723
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04382
Cornified envelope formation
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135558096
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135558096
09142 Cell motility
04820 Cytoskeleton in muscle cells
135558096
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135558096
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omm04147
]
135558096
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135558096
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135558096
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135558096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135558096
NCBI-ProteinID:
XP_064847917
LinkDB
All DBs
Position
17:complement(8850136..8937717)
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AA seq
1668 aa
AA seq
DB search
MSPFACWVTFCSLPIWWIVLLHISEQGVNAGETLGSCDGRDCSVCSCLPAKGARGAPGKL
GKQGPQGPDGIRGSAGPHGEKGRRGVEGPPGLDGKKGERGPTGHPGFPGIDGVNGHVGAG
GNPGLPGLDGCNGTRGQTGMPGVHGTDGFPGPRGYIGPKGTKGEPVYNVSGPGLPGDPGP
PGRSGSPGHAGPKGHTGPTGPNGNDGPDGLPGARGEPGDTGRSLPGIKGDEGDQGQPGPP
GPEEIVEPPDLFYPKGDKGDKGVPGPCGPRGITGEKSYEGLKGETGIRGFPGPRGYIGST
GLPGMPGPQGYPGDQGFPGLIGRSGPTGFPGDKGFRGPASQIYNNSTVAGYPGDPGPQGP
RGAPGDIGEMGINGPPGPPGVLSSTGQPGQLGYPGLPGPKGLKGEPGRYYTIEPIPGQPG
ERGRPGAKGFRGPPGRPGIYCVPGEPGVRGDDGDTGYPGLTGYKGEKGSNGECECTYENG
HRGIPGPPGPRGPLGYDGLPGHSGEKGDHGYNGDPGSQGSHGNPGRPGYNGVKGQKGESY
VTNFKGAKGDPGFNGPNGPHGATGRPGSDGFPGAVGDPGPPGDGYGDSVGDKGYPGLRGP
EGPPGRPGPPGPGAPGRHGRQGPPGDAGLPGLPGQTGQPGPLGEVLPCGPSNPGLPGLKG
LLGPPGNPGPPGPLGFPGPAGSLGPQGMRGDDGTDGGTGPPGHQGCVGDNGDPGQPGVNL
DGPPGLRGPPGSPGWPGPPGDTFNTGPGPVGPPGLPGLLGPKGDPGLPGIPGPPGGSGPY
GGVGYKGSKGDTGDPGPSGPPGPTECREKGAVGPPGASGPPGVRGPSGFHGDKGHKGAMG
PPGRGVKGPAGIPGPPGPPGPIGAKGFSGSPGVPGFPGVTGTKGPRGYPGRDGSAVPGTP
GRPGNPGSRGRQGERGFTGRDGQDGDQGYKGAKGHRGPPGSPGPVGVITVKGQKGSEGPP
GEHGFTGARGSKGSSGSPGKPGGNGQDGPPGYEKGLPGQPGRPGPPGPPGPRGPKGLSGI
VGFPGPVGDKGDPGHTGPPGKPGLPGIPGLQGDPGDSIGQPGLPGPPGPPGECRTLDPKG
DPGDPGEPGPRGSPGQPGVHGARGPLGGPGFPGPSGPPGRPGSPGPPGGILGGQGPNGNP
GLPGPPGFPGPPGLHGLNGLQGQKGEKGARGPDVLGPRGPSGYPGVKGHTGSQGPPGTSY
PGSKGLRGPPGYQGPKGVTGEPGGSGGECSECHRGPNGEPGYEGIHGPPGPPGEPGPAGT
AEPSPGDPGPQGPPGPNGHKGQRGPPGPLGPTDYSGSQGPKGARGPVGDMGPNGARGRPG
AYGLLGPKGDKGKPGDAGPKGLPGQVLDGDVTTQEPYRGIHGPSGPSGPNGPPGKAGPRG
NPGPHGPKGPAGSRGPPGRNGPPGPPGPLGDPGDHGQQGFVGHQGPPGSQGDRGYPGSTG
SVSSGFLLVIHSQSVEVPVCPEGSSPLWTGYSLFYLEGQERTHTQDLGQAGSCLRIFSTM
PFSYCNTGTCDYASRNDKSYWLSTTAAVPMMPVSGHEIRAHISRCAVCETPSPAVAVHSQ
DYIAPTCPPGWRSLWAGYSFLMHSGAGDEGGGQSLTSSGSCLRDFRAQPFVECQGPRGTC
HYFANVYSFWLTHVSLDEQFGPGPVPSVLKAADQQRQQASRCHVCTKG
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccttcgcttgctgggtgaccttctgttctctgcctatctggtggatcgtcctg
ctgcacatctctgaacagggggtgaatgctggagagacgctgggctcgtgtgacggcaga
gactgctcagtgtgcagctgtctccccgccaagggagcccggggggccccagggaagctg
gggaagcaggggccacagggcccagatggcatcaggggctccgcagggcctcacggagag
aaggggaggaggggtgtcgagggaccacctgggctggatgggaaaaaaggggaaaggggt
ccgactggtcacccaggatttcctggtatcgatggtgtcaacggtcacgttggtgctggg
gggaatcctggcctgccggggctagatggctgtaacgggaccaggggacagacggggatg
cccggtgttcatggcacggacggattccctggacccaggggatatatcggtcccaaagga
actaaaggggagcctgtctacaatgtatctggacctggccttcctggcgaccctgggcct
cctggaagatctggatcacctggccatgcgggacccaagggtcacacaggccctactgga
cctaatggaaatgatggtccagacggtctacccggggctagaggagaaccaggtgacact
ggcagatcactgccgggcattaaaggtgatgagggggaccagggtcaaccagggcctccg
gggcctgaggagatcgtcgagcctccagaccttttctaccccaaaggagacaagggggat
aaaggggttcctggaccatgtggacccagaggcataactggagaaaaatcctatgaagga
ctaaagggagaaactggaatccgtggctttcctggccctcggggttacattggatctacc
ggcctgcctggaatgcctggaccacagggctatcctggagaccaagggtttcctggtctg
atcggcaggtcaggaccaacgggcttcccaggagacaaaggcttcagaggaccagcgagc
caaatatacaacaattccactgtagcaggttaccctggtgatcccggcccccagggtcca
aggggagcaccaggagacattggagagatgggcattaatggacctcctggaccaccaggt
gtattaagctccacaggtcaaccagggcagctaggttaccccggtctccctggtcctaag
ggtttaaagggggagccaggaaggtactacactatagagccaataccaggacaaccaggt
gaaagagggcgtcccggagccaaggggttcagaggtcccccgggccgtccaggcatttat
tgtgttcctggtgagccgggtgtacgaggagacgatggcgataccggatatccaggatta
acgggatacaaaggagaaaaaggctccaacggtgagtgtgagtgtacgtacgagaatggt
cacagagggatcccaggtcctccgggcccccgcggacccctaggttatgacgggctgcca
gggcacagcggagagaaaggtgaccatggatataatggggaccctggctcacaaggatcc
cacggcaacccaggcaggcctggttacaatggagtgaagggacagaagggagagtcctat
gtgaccaactttaaaggtgcgaagggtgacccgggcttcaatggccccaacggaccgcat
ggcgccaccggtcgaccaggatccgatggcttccctggcgctgtgggagaccccggaccc
ccgggtgacggttacggtgactcggtaggtgacaaaggctacccagggctccgtggtcct
gaaggccccccaggcagaccgggccccccaggccctggtgctccaggccgtcatggccgc
caagggcccccaggggatgcgggcctcccaggtctccctggacaaactggacaacctgga
cctctaggcgaggttctgccctgtggcccttccaaccctggcctacctggcttaaagggt
ctacttgggcccccagggaatcctgggccaccaggaccacttggtttcccaggtcccgca
ggttcccttggacctcaaggcatgagaggagatgacgggacagatggaggaactggacca
ccaggacaccaaggatgtgttggagataatggtgaccctggtcaacctggagtcaacctg
gacggaccaccaggactccgtggaccaccaggctctccaggctggccgggacctccagga
gacaccttcaacaccggacctggtcccgtgggtccacctggactacctgggttactggga
cccaagggagatcctggtttgccaggcatccctgggcctccagggggatcaggcccgtac
ggaggtgtaggttacaaggggtcaaaaggagacactggggacccaggaccgagcggccct
ccagggccaacagaatgtagagagaaaggagctgttggcccaccgggagcctcaggacca
ccaggagtcaggggcccatcgggtttccatggtgataaaggacataagggtgcgatgggt
cctcctggacgtggagtgaagggaccagcagggatccccgggcctcctggtcccccggga
cccattggtgccaaaggtttcagtgggtcaccaggtgtcccgggcttccctggtgtaaca
gggaccaaagggcccaggggatatcctggtagagatgggtcggctgttcctggtacaccg
ggtcggcctggaaacccaggatcccgcgggaggcaaggggagaggggtttcacaggacgc
gacggtcaggatggagaccaggggtacaaaggagctaaaggtcacagaggtccccccgga
agtcctgggccagtaggagtcataaccgttaaaggacagaagggctctgaaggaccacca
ggagaacatggcttcactggagccagaggttccaagggctcaagtgggtcaccaggtaaa
ccaggggggaatggacaggatggtcctcctggatatgagaaagggctcccaggacaacct
ggcagacctggtccccctggaccccccggacctcgaggacctaaaggcttgagtggtata
gttggtttccctggaccagtcggtgataagggggaccctgggcacacgggccctcctggg
aaaccaggccttccaggaataccaggcttacagggtgacccaggagactctataggacaa
ccaggactacctggaccaccgggtcctccaggagaatgcaggaccttagatccaaaggga
gacccaggagatccaggggagccaggacccagaggatcaccaggacagcctggtgtccac
ggagcccgtggaccactgggtggcccaggtttccctggtccctcaggtccgccgggtcgt
ccaggctccccagggcctcccggaggaattctcggaggtcaaggccccaatggcaatcct
ggactgcccggtcctccaggtttcccgggacccccagggctgcatggtctgaacgggctc
caaggccaaaaaggagagaagggagccagaggaccagatgtgttgggcccacgagggcca
tctgggtaccccggagtcaaaggccacacaggctcccagggacccccgggaacttcttac
cctggatctaaaggcctaaggggccctccaggctaccaaggaccaaaaggagtcactggt
gagcccggtggttcaggtggagagtgctcagaatgtcacagaggacccaacggagagcca
ggatacgaaggcattcatggacctccaggaccacccggtgaaccgggtcctgctggtact
gcagagccatctccaggagacccaggcccccaagggccaccagggcccaatggccataaa
ggacagagaggccccccaggacccctagggccaacagactactcaggatcacaaggaccc
aaaggtgccagaggccctgtgggtgacatgggccctaacggagcaagaggtcgtccaggt
gcctacggcctcctggggcccaaaggtgacaaaggcaaacctggggatgcaggtcccaaa
ggcctgcccggtcaggttttagacggtgacgttaccactcaggaaccctaccgtgggatc
catggcccctcaggtccatcaggtccaaatggtcccccgggaaaggctgggccccgtggg
aaccctgggcctcacggtcctaagggcccagctgggtcgcgagggcccccagggagaaat
ggacctccaggtccacctggacctttaggagacccaggcgatcatggacagcaaggtttt
gtgggacatcagggtcctccgggttctcagggtgaccgtggctaccctggttccactggc
tctgtgagttcaggcttcctgctggtgatccacagccagtcggtggaggtccctgtgtgt
cccgagggcagcagccccctgtggaccggctatagcctgttctacctggaggggcaggag
aggacacacacacaggacctgggccaggccggctcatgtctacgtatcttcagcaccatg
cccttctcctactgcaacacaggtacctgtgactacgccagccgcaatgacaaatcctac
tggctttccaccaccgctgccgtgcccatgatgcccgtgtcgggccacgagatccgcgcc
catatcagccgctgtgccgtgtgtgagacaccctcacccgctgtggcagtgcacagccag
gattatatcgcccccacctgcccccctgggtggaggagtctgtgggctggctactccttc
ctcatgcactctggagcgggcgacgagggtggcggccaatctctgacctcatccggcagc
tgcctgcgagacttccgtgcccagccctttgtagagtgccagggcccgcggggcacatgc
cactacttcgccaatgtctacagcttctggctgacccatgtttccctggacgagcagttt
ggccctggccccgtccctagcgtgttgaaggccgccgatcaacagcgccagcaggccagc
cgctgccacgtatgtaccaagggctga
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integrated database retrieval system
