Oncorhynchus masou masou (cherry salmon): 135558240
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Entry
135558240 CDS
T10723
Name
(RefSeq) tiggy-winkle hedgehog protein-like
KO
K11988
sonic hedgehog
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
135558240
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
omm01002
]
135558240
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135558240
Peptidases and inhibitors [BR:
omm01002
]
Cysteine peptidases
Family C46: hedgehog family
135558240
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Morphogens
135558240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Hint_2
Hom_end_hint
Intein_splicing
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
135558240
NCBI-ProteinID:
XP_064848039
LinkDB
All DBs
Position
17:complement(24019207..24022076)
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AA seq
415 aa
AA seq
DB search
MDMMLMSIRLALVGFICLSLVSAGFACGPGRGYGKRRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKNKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADKEGHIVSSD
FLMFMDRDPVTSREFYVFETEKPKRKLRLTPAHLVFVTNNVTDGDMTAVFASNVKPGQQV
FVVDEALDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSLTGLVKEREEIPQRDGIDWYSDILYHIGTLLLDRNSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacatgatgctgatgtcgataagacttgcgcttgtgggcttcatctgcctgtcttta
gtatccgctggcttcgcctgtggtccaggtaggggatatggaaaaagaagacatccgaaa
aaactgaagcctttggcttacaagcagttcattcccaacgtggcagagaagacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggctatttcagtcatgaatcagtgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaggaa
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataaaaacaag
tatggaatgttatccaggctcgcagtggaggcgggattcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaaatcgggtggc
tgcttcccaggatccgcctcggttcttctcgaggatggtcggagcaagctggtaaaggaa
ctggaggtgggcgacaaagtgttagctgcagacaaagaaggacatattgtatctagcgat
ttccttatgttcatggaccgagatccagtaacaagtcgagaattttatgtttttgaaacg
gagaagcccaaaagaaagttaagactgacgccggcacaccttgtcttcgtcaccaataac
gttacggatggcgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgtcgtggacgaggcactagaccacctaaaggcagtcacagtggaaaggatttacgtg
gaagaatacgagggatcttatgcaccagtgacttcacaaggaaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcctttgca
ccagtccggttgggtcacgcgttgatgtcgttgacaggtctagtcaaagagcgcgaggaa
atccctcagagagatggaatagactggtactcagatattctataccacatagggacattg
ctgctggacagaaactcctttcatccccttggaatgtcacaaagttga
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