Oncorhynchus masou masou (cherry salmon): 135558437
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Entry
135558437 CDS
T10723
Symbol
cpdp
Name
(RefSeq) CPD photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omm03400
]
135558437 (cpdp)
Enzymes [BR:
omm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
135558437 (cpdp)
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
135558437 (cpdp)
Prokaryotic type
135558437 (cpdp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
135558437
NCBI-ProteinID:
XP_064848309
LinkDB
All DBs
Position
17:10885056..10902594
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AA seq
551 aa
AA seq
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MHRSVLLIPASKHIWKFVTLESQRHCSFTKLVGPISINNRTTMPAEKRKATFVKMDNTKR
QKLQAVKEGKRERVEGWLQDVVAEQRRENKDLKFNMQRLLFLSQTQKIKQGSEGVVYWMN
RDHRVQDNWALIYAQQLALEEKLPLHICFCLAVPQNPKLATIRHFGFMLKGLEEVAKDCS
ALDIQFHLLQGSAGELLPGFVADWSFGAVVTDFSPLRTPLQWLEEVKKGLPSDIPFIQVD
AHNVVPCWVASDKLEYSARTIRNKITKLLKEFLTEMPLVDKHPHTALRTAKPVDWAEALS
SLEVDKTVEEVDWAKSGTAAGIAMLESFIDLRLKNFATQRNNPNSSAVSQLSPWIRFGHL
SAQRVVLQVKCCGKSAGESVSSFTEELVVRRELTDNFCFYNPSYDSVKGANDWAQKTLKD
HAKDPRPYIYTREQLEKAQTHDKLWNAAQYQMVIEGKMHGFLRMYWAKKILEWTSSPEGA
LSIAIYFNDRYELDGQDPNGFVGCMWSICGVHDQGWAERPIFGKIRYMNYKGCTRKFDVA
QFERKYCPKDL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgcagtgtgttgctcattccagcatccaagcacatttggaagtttgtgacactc
gagagccaaagacactgctcctttaccaaattagtaggcccaatcagcattaataatcga
accaccatgccagcagaaaaacgcaaggcaacatttgtcaaaatggacaacaccaaacgg
cagaagctgcaggccgtaaaagaggggaagagggagagagtagagggctggctgcaggat
gtggtggcagagcaacggagggagaataaggacttgaaattcaacatgcagcgcctcctt
tttctgtcccaaacccagaagataaagcaaggttcagagggagtagtctactggatgaac
cgggatcacagggtccaagataactgggcgttgatctatgcccagcagcttgccctcgaa
gagaagctgcccctgcatatctgtttctgtttggcggtaccacaaaacccaaagttggcc
accatccgacattttggcttcatgctgaagggactggaggaagttgcaaaggactgcagt
gccctggatattcagttccatctgctccagggctccgctggagaattgctgccagggttt
gtggcggactggagttttggggcagtagtgaccgacttctcccctcttaggacaccgctg
cagtggttggaggaggtcaaaaaggggcttccgtcggatatccccttcatacaagtcgat
gcccataacgtggtgccctgctgggtggcatcagacaagctggagtattctgccaggacg
atccgtaacaagatcaccaagcttctgaaggagttcctcacagagatgcctttagtggat
aaacacccacacactgctctccgaaccgccaaaccagtagactgggcagaagcattgtcc
tctctggaggtggacaagaccgtggaggaggtggattgggccaagtctggcactgcagca
ggcatagccatgttggaatctttcatcgacctgcgcctcaagaactttgccacgcagagg
aacaaccccaattcttctgccgttagtcagctctcgccgtggatccgctttggtcacttg
tctgcccagcgcgtggtgctgcaggtaaagtgctgtgggaagagtgccggcgagtcagtt
tcctccttcacagaagaactggtggtgcgcagagagttgaccgataacttctgtttctac
aaccccagctatgacagcgtgaagggtgcaaatgactgggcccagaaaacattgaaagat
cacgccaaagaccccaggccatacatctatacccgcgagcagctggagaaagcccagacc
cacgacaagctctggaacgcagcccagtaccagatggtgattgagggtaagatgcatggc
ttcctaaggatgtactgggccaagaagatcctggagtggacctcctcaccagagggagcg
ctctccatcgccatctacttcaacgaccgatacgagttggatgggcaggaccccaacgga
ttcgtaggttgtatgtggtccatatgtggggtccatgaccagggctgggccgagagaccc
atcttcggaaagatacggtacatgaactacaaaggctgcacccgcaagtttgacgtggca
cagtttgagaggaagtactgccccaaagacctgtaa
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