Oncorhynchus masou masou (cherry salmon): 135558532
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Entry
135558532 CDS
T10723
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03013
Nucleocytoplasmic transport
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135558532
03015 mRNA surveillance pathway
135558532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135558532
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135558532
5.6.2.5 RNA 5'-3' helicase
135558532
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135558532
mRNA cycle factors
Common to processing body (P body) and stress granule
135558532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
AAA_16
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
135558532
NCBI-ProteinID:
XP_064848471
LinkDB
All DBs
Position
17:13514266..13530205
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLENQVNGP
DGVQQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSSTGRSSNMYFQTHDQIGMIGPGPMASMNIPF
NLVMPPMPPPGYLGQVHCPPAGRGGGMKGKAGGGGVRGGRQRSRGMGNHGGGSGQHGLMS
GSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacactgaggaa
gcggagttgcttggagcagatacccagggttcggagtatgagttcacggattttaccctg
ccgagccagactcaaacaggccaaacgcagagtcagttggaaaatcaggtgaatgggcct
gatggagtacagcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagacgaggaagacagctattatactaaagacctcccagtccatgca
tgcagttactgtggcattcacgatcctgcttgtgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacatctggcagccacattgtgaaccacctggttaga
gccaagtccaaggaggtgactctgcacaaggatggtcctttgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttccttctggggttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctctgagcaggagcagctgcgggcccgccagatcaccgcccagcagata
aacaagcttgaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcaacacgtgttgctgcgctacgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggctgactacgataagaaactcaaagag
tcccagacccaagacaatattactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggagatgag
atttgcctgaggtacaagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggcgatgagatagccattgagctgaggagcagtgctggggcc
cccgtggaagtaccacacaacttccaggttgactttgtgtggaagtccacctcctttgac
cggatgcaaagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtatatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcacggggaaaactgtcacc
tctgccacggtagtgtaccacctggccagacagggcaacgggcctgtgctggtgtgtgct
cccagtaacattgcggtggaccagctgactgagaagatccacatgtcaggtctgaaggtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctcggacgagaagcgatacagggccctgaagcgcacc
gccgagagggaactacttatgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggctgccaaggcgggcctgtcc
cagtccctgtttgagcgtcttgtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgctttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccacaa
ccagacaagcccatgttcttctatgtgaccctgggccaggaagaaattgcaagctctgga
acctcctatcttaacagaactgaggcttccaacgtggagaagatcaccaccaggctgcta
aaggctggtgccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcattggcttcctcaacgacccacgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccacctgctcaactactataaggagcagaaggttctggtggaggga
ccactcaacaacctgagggagagcctcatgcagttcagcaagccccgcaaactggtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgcaagggaggctctt
attcctggatctgtgtatgaccgcagcagcactggacgttcatccaacatgtacttccag
acccacgaccagatcggcatgattggtccgggccccatggcctccatgaacattcccttc
aacctggtcatgccccccatgccgccgccaggctacctgggccaggtccactgcccgcca
gcaggccgtggtggaggtatgaagggtaaggcgggcggcggaggggtgcgaggtgggcgc
cagcggagccgtggcatggggaaccacggcggaggcagcgggcagcacggcctcatgagt
ggcagccaggccagccaggacctgggctcccagcccttctcccagggacccctcacacag
ggctacatcaccatgagccagccttcccagatgagccagcctggcctctcccagcctgag
ctctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtggccctctcc
caagactccacctaccaaggggaaagagcttatcaacatggtgtgactggactgtcccag
tactag
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