KEGG   Oncorhynchus masou masou (cherry salmon): 135558689
Entry
135558689         CDS       T10723                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
omm  Oncorhynchus masou masou (cherry salmon)
Pathway
omm04115  p53 signaling pathway
omm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:omm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    135558689
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    135558689
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:omm04121]
    135558689
Enzymes [BR:omm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     135558689
Ubiquitin system [BR:omm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    135558689
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     135558689
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st zf-C3HC4_2 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_C zf-C3HC4 Beta-prop_CAF1B_HIR1 Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_EML zf-RING_2 zf-RING_UBOX DSE1_N ASA1 zf-C3HC4_3 Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 WD40_like WD40_RFWD3 Beta-prop_WDR35_TULP_N PAC11 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_WDR41 zf-RING_10 zf-rbx1 UvrD-helicase WDR90_beta-prop_4th RING_ZNF598 zf_C2H2_10 RING-HC_RBR_RNF216 Sina_RING
Other DBs
NCBI-GeneID: 135558689
NCBI-ProteinID: XP_064848799
LinkDB
Position
17:21343639..21353716
AA seq 733 aa
MSSNRQQQTSGGTGPGTSSSSTGGTTNANGATSVGGNVSTNVNNSSNVVPSRTLATTGDG
LLVPAAAVQSPISLATLSRPSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSD
EKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMSDMDRNLDSTVPNFEAPSP
APSSLMDSTEYPSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMTRL
TDDSRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVCFVIVFYSAQFP
NSDELKLTSVEDS
NT seq 2202 nt   +upstreamnt  +downstreamnt
atgtcaagcaaccgtcaacagcaaactagcggtggaacggggcctgggacaagtagcagc
agtaccggtggcactaccaatgctaacggtgctaccagcgtaggcggtaacgtcagtacg
aatgtgaataattcttcaaatgttgtgccctcacggactctggctacaactggcgatggg
ttgctcgtacctgccgcggctgtccagtctccaataagcttagccacacttagcagaccc
agttcatcctcttctggcaccagcagaaaacgtcctctccaccaagcacctctctacaat
ggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatctgttttgaa
atgattgaggaggcacacatgacaaaatgtggacacagtttctgttacaagtgcattcgc
cagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgacaacgtggat
cagctctatccaaactttcttgtcaatgaactcattctcaaacaaaaacagagatcagat
gaaaaacggctgaagatggaccatccgaatgggtcgagatggcaagtgtttcaagacgtc
ctgggcacagaccaagaaaacctagatcttgctaatgtcaacttaatgctggaactcctt
gtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcagatcttaatg
gaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttgcagaaggag
ctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactgtactcacca
atgagtgacatggatcgtaacttggacagcactgtgcccaatttcgaggctccatcacct
gcacctagtagtcttatggattcgacagagtatccgagtcaaccaccaggttttggtgga
acttcccagggtaagaggcaaacgtggtacaacagtactctggcttcacgtagaaagagg
ctcacagcgcactttgaagatctggagcaatgctacttctctaaccggatgaccagatta
acagatgacagcaggaacctaaatcaactggatgatttcatggagtgtctctccaagttc
acacggtacaactctgtgcggccgttggcgaccctttcttatgctagtgatctctacaac
ggctccagtattgtctctagcattgaatttgatcgtgactgtgattactttgccatcgct
ggcgtcaccaagaaaatcaaggtgtttgagtatggaacagtgatccaggatgctgtggac
attcattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatcagctggagc
agctaccacaagaatctgttggctagcagcgactacgagggaacagtcatcctgtgggat
ggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaagatgttggagtgtc
gatttcaacctcatggatcccaagcttctagcctctggttctgatgatgcgaaagtgaag
ttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagcaaatgtgtgc
tgtgtaaagttcagtcccacatcgaggtatcaccttgcttttggatgtgcggaccactgt
gtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaaggccacagg
aaagctgtgtcctatgctaagtttgtcaacggagaggaaattgtatctgcctcaacagac
agccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattcaagggccac
atcaatgagaagaactttgttggcctcgcctccaatggggactatgttgcgtgtggaagt
gagaacaactcactttatctctactacaaggggctgtccaagacactgctgacgttcaag
tttgacactgtgaagagtgtgttggataaagacaagaaagaggatgacaccaatgagttt
gtcagcgccgtatgctggagagctatgcctgacggggagtccaatgtgctgattgctgca
aacagtcaaggaacaatcaaggtttgttttgtgattgtattttactcagcccagttcccc
aatagtgatgaacttaagcttacgagtgttgaagacagctga

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