Oncorhynchus masou masou (cherry salmon): 135559024
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Entry
135559024 CDS
T10723
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
omm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135559024
09123 Folding, sorting and degradation
03018 RNA degradation
135559024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135559024
03041 Spliceosome [BR:
omm03041
]
135559024
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135559024
mRNA degradation factors
5'-3' decay
Lsm complex
135559024
Spliceosome [BR:
omm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
135559024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
GPAT_C
Motif
Other DBs
NCBI-GeneID:
135559024
NCBI-ProteinID:
XP_064849408
LinkDB
All DBs
Position
17:38657707..38663935
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AA seq
111 aa
AA seq
DB search
MADRNQDRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTI
EYLRDPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaaccaggacagaaacaaggaaggagagaagaagaagaaagagagtatc
tttgacctgtcaaagtacattgataaacaaatccgtgtgaagtttcagggaggacgagag
gccagtggagtcctgaaggggtttgaccccctgttgaacctggtattggacagcaccatc
gagtacttgcgggatcctgacgaccagttcaagttgactgaggacacccggcagctgggc
ctggtggtttgtagagggacttccgtggtgctcatctgtcctcaggacggcatggaagcc
atccccaaccccttcatccagcagcaggacggatag
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