Oncorhynchus masou masou (cherry salmon): 135559391
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Entry
135559391 CDS
T10723
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03040
Spliceosome
Brite
Enzymes [BR:
omm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135559391
Spliceosome [BR:
omm03041
]
Complex C
Other components
Step II factors
135559391
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Other DBs
NCBI-GeneID:
135559391
NCBI-ProteinID:
XP_064849624
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Position
2:complement(33872076..33890011)
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AA seq
1261 aa
AA seq
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MEDDASLHRLEGSDPTAQVCGLIVKKSAAVEPHVFRAPTPRTSLLGLDLLAAQKRKEREG
KEQAEADSDDRNNKKSKVSSYKDWEEGKSDSGSDEEDKDEEDQGGRKESSRKYRVTGSET
PSNPGGVSEEFRRKHQQREKDRREHGMYASSKEDKNREREKDRERIRDADRDRRGERDER
ERSNSRGSSRSERGDRSERSERSQREGWSSERISRGSKREEPPTPQTRPKDGTPSRTSWD
EDDGGYASSRRSHWESPSPAPSHKDSDKSERSERSPRSGRESERKDKSVRGRYPDDTPLP
TPSYKYNEWANDRKHLGSTPRLSRGKGKNEGEDGIAFDNDDEKQQWEEDQKQADRDWYMM
DEGYDEFHNPLTSTSEDYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSGVVQ
RLEVDDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQ
LVRKHREQKERKKAQQKHWELAGTKLGDIMGIKKTEDGDSSGGKPVGEDGKVDYRTDQKF
ADHMKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQL
TQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEKTVI
KYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSA
TMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMGGDILI
FMPGQEDIEVTSDQIVERLEDLESAPPLTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVAT
NIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQC
YRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMY
QLWILGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFY
RPKGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREVR
SQLKDIMVQQRMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTS
SLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENRRRA
KEEITNMEEEMSLAEQQLRSRREDQDRKSNVGSVRAVKICTPGRKEEAPMTPKRTPARFG
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcgtcgctgcaccgactggagggcagtgaccccactgcgcaggtctgc
gggttgatcgtgaagaagagtgcagcagtagagcctcatgtctttcgtgcacccactcca
cgcacctctctcctgggcctggatctgctggcagctcaaaagagaaaggagcgagagggc
aaggagcaggctgaggctgacagcgatgacaggaataacaagaaatccaaggtgtcctcc
tacaaggactgggaggaagggaaaagtgattctgggtctgatgaagaagacaaagacgag
gaggaccaaggtggtagaaaagagagcagcaggaaataccgtgtgactggctcagagaca
ccctctaaccctggaggggtcagtgaagagttccgtcgcaaacaccagcagagggagaaa
gaccggcgtgagcatggaatgtatgcctcctccaaagaggacaagaacagagagagggag
aaggacagagagaggatcagagatgcggacagagatcgaaggggtgaaagagatgagcgg
gagcgcagtaacagccgcggcagcagccggtcggagcgtggagaccgcagtgagaggagt
gagcgctcacagagagaaggctggtcctccgaacgcatcagccggggtagcaagagagag
gagcctccaacgccccagacacgccccaaagatggcactccctcgcgcaccagctgggat
gaggatgacggtggctatgccagctcacgccgttcccactgggaatctccctctcctgcc
ccttcacacaaggattctgacaagtctgaacggtcggagcgcagcccccgctctggacgg
gagagcgagaggaaggacaagtcagtcagaggccggtatcctgatgacacgccccttccc
accccatcatacaagtacaacgaatgggccaatgacaggaagcacttgggctccactcct
cgtctgtcccgtgggaaaggtaagaatgaaggagaggatggcatcgcctttgataatgat
gatgagaagcagcagtgggaagaggaccagaagcaagcggacagagactggtacatgatg
gacgaaggctatgatgagttccacaacccactgacctccacctctgaggattatgtgaag
aagagagagcagatcctgcagaagcagacacagaaacgcatctctgcccagagacgacag
atcaatgaggataatgagcgctgggagactaaccgtatgctgaccagtggagtggtccag
aggctggaggtggatgatgactttgaggaggacaacgctgccaaggttcacctgctggtt
cacaacctggtccctcccttcctggacgggaggatagtcttcaccaagcagccggagcct
gtcatccctgtgaaagacgccacctctgacatggccatcatctcccgcaagggcagccag
ctggtccgcaagcaccgcgagcagaaggaacgcaagaaggctcaacagaaacactgggag
ctggcaggcaccaagctgggtgacattatgggcatcaagaagaccgaggacggggatagc
tctgggggaaagccagtgggcgaggatggcaaggtggactacagaacggatcagaagttt
gcagaccacatgaaagataagagtgaggccagcagtgagtttgctaagaagaagaccctg
ctggaacagaggcagtatctgcccatctttgctgtgaggcagcagctgctcaacatcatc
agggacaacagcattgtgatcgtggtgggggagacgggcagtgggaagaccacccagctg
acccagtaccttcacgaggacggctacaccagttacggcatggtgggctgcacccagccc
cgcagagtggcagccatgagcgtggccaagagagtcagcgaggagctgggcagcaacctg
ggagaggaggtgggttatgcgatccgttttgaggactgtacgtcagagaagactgtgata
aagtacatgacagacggcatcctgctgagagagtctctcagggagtccgatctggaccac
tacagtgctgtcatcatggacgaggcccacgaacgctccctcaacacagacgtgctgttc
ggcctgctacgagaggttgtatcgaggcgttctgacctcaagctgatagtcacctcagcc
accatggactctgacaaatttgctgcatttttcggcaacgttcccatattccacattcca
ggaagaacattccctgtagacatcttattcagcaagactccccaggaagactatgtggag
gcagcagtgaagcaggccctacagatccaccttagcggtatggggggagacatcctcatc
ttcatgcctggtcaggaggacatcgaggtgacgtcagaccagattgtggagcgtctggag
gatctggagagcgcccctcctctgactgtactgcccatctactcccagctgccctctgac
ctccaggccaagatcttccagaaggctcctgatggtgtgaggaagtgcatcgttgccacc
aacattgccgagacctccctgactgtggatggtatcatgtttgttgtggatgctggatac
tgcaaactcaaggtgttcaaccctcgtattggcatggatgccctgcaggtgtaccccatc
agccaggctaacgccaaccagcgtgcgggcagagcaggacgtacagggccaggccagtgt
tacaggctgtacacccagagcgccttcaagaatgagatgttgaccaccaccatcccagag
attcagcggaccaacctggccaacgtggtgctgctgctcaaatccctgggggtccaggac
ctgctgctcttccacttcatggaccccccgcctgaggacaacatgctgaactccatgtac
cagctgtggatcctgggggccctggacaacacaggttccctgacgcccactgggaggctg
atggtggagttccctctggacccggctctgtccaagatgctgattgtatcatgtgacatg
ggctgcagtgctgacatcctcatcatcgtctccatgctgtctgtaccggccatcttctac
aggcctaagggtcgtgaggaggagagtgaccaggtgagggagaagttctctgtcccagag
agtgaccacctgacctacctgaacgtctacctgcagtggaagaacaacaactactccagc
atctggtgcaacgaacacttcatccacaccaaggccatgcgaaaggtgcgtgaggtgcgc
tcccagctcaaagacatcatggtgcagcagaggatgaacctggtgtcctgtggctcagac
tgggacatcatcaggaagtgtatctgtgctgcctacttccaccaggcagccaagctgaag
ggcataggggagtatgtgaatgtgaggacaggcatgccctgccacctccatcccaccagc
tctctgtttggtatgggctacaccccagactacatcacctaccacgagctggtcatgacc
accaaggagtacatgcagtgtgtgactgcggtggatggggagtggctggctgagctgggg
cccatgttctacagcgtcaaacaggcaggaaagagcaggatggagaaccggcggcgggcc
aaggaggagatcactaacatggaggaggagatgtctctggcggagcagcaactgaggagc
aggagagaggatcaggacaggaagagtaacgtgggcagcgtcagggctgtgaaaatctgc
accccaggaaggaaggaggaggcacctatgaccccaaagcgcaccccagctcgttttggg
ctctag
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