Orbus mooreae: RHO11_02235
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Entry
RHO11_02235 CDS
T10515
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
omo Orbus mooreae
Pathway
omo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHO11_02235 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omo03400
]
RHO11_02235 (mfd)
Enzymes [BR:
omo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHO11_02235 (mfd)
DNA repair and recombination proteins [BR:
omo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHO11_02235 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
DUF6007
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WVD61968
LinkDB
All DBs
Position
471530..474973
Genome browser
AA seq
1147 aa
AA seq
DB search
MPNITLPKVSGEIQEFGQLLGSSISLFCAEILSRHQGPVVIVTDDMQQTARLHEELKQYS
SSPSSLFPDWETLPYDSFSPHQDIVSERLSCLYQLSSFNKGALILPINTLMQKVCPSSYL
SGHVFIMQKGQKISRESLRIELENAGYRHVSQVMEHGEYATRGALFDIYPMGSVSPYRLD
FFDDEIDSLRIFDVETQRTLDEIERVQLLPAHEYPFDKSAIELFRSQWREKFAVRLESES
IYQQVSKGILPTGIEYWQRLFFNQPLMSLFDYLPNNTLFITTPNIHLFAEKYWQDVKQRY
ESRNVDPMRPLLPPEEIWLKVEDIFAQFKQYPRLIVSPEKLTTKKAINLDYQALPELAIQ
IQQKDPYSHFQTFVNNYLGKVIFSVESQGRREALQDILSKINIRPKYLEKISDLTQYDEK
FYLLIGASEQGFIDLDKQFALITENELLGRRIIRRRKESKQIINTDNLVRSLAELTPGKP
VVHFDHGVGRYAGLTTLETGGITAEYLIILYANDTKLYVPVSSLNLISRYSGGDEENAPL
NKLGTDAWTKAREKAAEKVRDVAAELLDIYAQREAKPGFQFKQDREQYELFCQGFAYQET
DDQLNAIGAVLGDMCAPVAMDRLVCGDVGFGKTEVAMRAAFLAVINHKQVSMLVPTTLLA
QQHYENFLDRFANWPIRIEVLSRFKTAKQQQQILLALEEGKVDIIIGTHKLLQTDVKWHD
LGLLIVDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR
RLAVKTFVREYDNYVIREAILREILRGGQVYYLHNDVADIEKRQEQLQELIPEARIAIGH
GQMHERDLERVMNDFHHQRFNLLLCTTIIETGIDVPNANTIIIERADKFGLAQLHQLRGR
VGRSYHQAYAYLLTPPPKALSKDAKKRLEAIASLEDLGAGFALATHDLEIRGSGELLGED
QSGQIETIGFTLYMELLDEAVKSLKQGKEPSLESLLNSQHTEVELRLPTLIPDNFIPDVN
TRLSLYKRIASIEELDELREIKVEMIDRFGLLPDPVQFLLDITSIRYHAQNLGINKIEFS
DKGGYIEFGANNRISINYLIGEIQKSPKKYRLDGQNRLKLLTTGLDRQPRIDYINNLLSQ
FMLNCES
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcccaatattacactcccaaaagtatctggagagatccaagagtttggtcaattactt
ggttcatcaatttcgctattttgtgctgaaatactctctcgtcatcaaggccctgtggtc
attgttactgatgatatgcaacaaacggctcgcctacatgaagagctcaaacagtattca
tcatcaccatcgtctctttttcccgattgggaaaccttaccttatgatagcttttcacca
catcaagatattgtttctgaacgattatcatgtctatatcaactctcttcgttcaataaa
ggggctttaattcttccaattaataccttaatgcaaaaagtatgtccaagctcttaccta
agcggacatgtttttattatgcaaaaagggcaaaaaatatctcgcgaaagcttaagaatt
gaattagaaaatgctggatatcgtcatgttagccaagtgatggaacatggtgaatatgca
acacgaggagcactattcgatatttatcctatgggaagtgtttcaccttatcgactagat
ttctttgacgatgaaattgatagtctccgtatttttgatgttgagacacaacgaactctt
gatgagatagagcgtgtacaactcttacctgctcatgaatatccattcgataaaagtgct
attgaattatttcgtagccagtggcgagaaaaatttgcagtcagattagaaagtgaaagt
atttatcagcaagtcagtaaaggtatattaccgacagggattgaatattggcagagacta
tttttcaatcaaccattaatgtcactatttgattatttaccgaataatacgctttttatt
actactcctaatattcatctctttgccgaaaaatattggcaagatgtcaaacaacgctac
gaaagtcgcaatgttgatcctatgcgccctcttctacccccagaagagatttggttaaaa
gtggaggatatctttgcacaatttaagcaatatccacggttgattgtaagtcctgaaaaa
ctaacgactaaaaaagcaattaatcttgattatcaagctttacctgaactcgctattcaa
attcaacagaaagatccttattcacatttccaaacatttgttaataactatcttggtaaa
gtaatattctctgttgaatcacagggtcgccgtgaagcattgcaagatattcttagtaaa
atcaatattcgacctaagtatcttgaaaagatttcagatcttactcaatatgatgaaaaa
ttttatttacttattggtgctagtgagcaagggtttattgatctcgataaacagtttgct
ttaattaccgaaaatgagctactcggtcgtcgaattatccggcggagaaaagagagtaag
caaattattaatactgacaacttggttcgtagcttagctgaactgactccaggtaagcca
gttgttcatttcgatcatggtgttggtcgctatgcagggctgacaacacttgagacaggc
ggtattaccgctgaatatttaattattttatatgctaatgatacaaaactctatgtgccc
gtttcatcacttaatttaattagtcgttactctggtggagatgaagagaatgctccatta
aataaattaggtaccgatgcgtggacaaaagcacgagaaaaagcggctgagaaagtccgt
gatgttgcagctgagttacttgatatttatgcccaacgagaagcaaaaccagggtttcaa
ttcaaacaagatcgtgaacagtatgagttattttgtcaaggatttgcctatcaagagact
gatgatcaacttaatgcaatcggtgcagttcttggcgatatgtgtgctcctgtcgccatg
gatcgccttgtatgtggtgatgttggttttggtaaaacagaagtcgcaatgcgcgcggca
tttttggctgtcattaatcataaacaagtttcgatgttggtaccaacgacgctacttgct
cagcagcattatgaaaactttttagatcgatttgctaattggccaattcgtattgaagtg
ctatcgcgttttaaaacagccaaacagcagcaacaaattctattagctttagaagaaggt
aaagttgatatcatcattggtactcataaattattacaaaccgatgttaaatggcatgac
ttagggctattaattgttgatgaagagcatcgttttggtgttagacaaaaagaacgaatt
aaagcaatgcgagccaatgttgatatattgaccttaacggcaacaccaatacctagaacg
ctaaatatggctatgagtgggatgcgagatttgtcgattattgctacgccgccggcaaga
cgcttggccgttaaaacatttgttcgagaatacgacaattacgtgattagagaagctatt
ttacgagaaatattacgtggaggacaagtttactatttacataatgatgttgctgatatt
gagaaaagacaagagcaattacaagagttgattcctgaagcaagaattgctattggtcac
ggtcaaatgcatgaacgcgatttagaacgagtaatgaatgacttccatcatcaaagattt
aatttattactctgtaccacaatcattgaaacaggaattgatgttcctaatgcaaatacg
attattattgaacgtgctgataaatttggtctagctcagttacaccaattaagagggcga
gtcggtcgatcttatcatcaagcttacgcctatttattaacgcccccacctaaggcatta
agtaaagatgctaaaaaacgtttagaagcaatagcttccttagaagatctcggcgctgga
tttgctttggcaacacatgatcttgaaattcgaggctcaggggaactgttaggtgaagat
caaagtggtcaaattgaaaccatcggttttacactatacatggaattacttgatgaagcg
gtaaaatctttaaaacaaggtaaagagccatcgttagaatcattacttaatagccagcat
actgaagtagaattacgtctaccaacattaattcctgataattttattcccgatgtgaat
actcgtttatcgctatataaacgaattgccagcatcgaagagcttgatgaattaagagaa
attaaagttgaaatgattgatcgctttggtttactgcccgatcccgtacagtttttactc
gatatcaccagtattcgatatcatgcacaaaatttaggtattaataaaattgaatttagc
gataaaggtggttatatcgaattcggtgctaataaccgcatatcgattaattatttgatt
ggtgaaattcaaaaatcacctaaaaagtaccgtttagatggtcaaaatcgattgaagctg
cttacaacgggattagatagacaaccgcggattgactacattaataacttattaagccaa
tttatgcttaattgtgaaagttaa
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