Orbus mooreae: RHO11_07780
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Entry
RHO11_07780 CDS
T10515
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
omo Orbus mooreae
Pathway
omo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHO11_07780 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omo03019
]
RHO11_07780 (rnr)
03016 Transfer RNA biogenesis [BR:
omo03016
]
RHO11_07780 (rnr)
Enzymes [BR:
omo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RHO11_07780 (rnr)
Messenger RNA biogenesis [BR:
omo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHO11_07780 (rnr)
Transfer RNA biogenesis [BR:
omo03016
]
Prokaryotic type
tRNA degradation factors
RHO11_07780 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
WVD60401
LinkDB
All DBs
Position
complement(1649563..1651929)
Genome browser
AA seq
788 aa
AA seq
DB search
MVKDPFYDREAEKYQSPIASRELIISYLEKIAKPANLDNIAQAMELKTEEQKEALHRRLR
AMERDGQVIFTRRKCYALPDKLLMVKGKVIAHRDGFGFLRVEGQTEDYYLSPEQMKKALQ
GDIVLAQPIGSQYKGKTEARIVRILEPRSNQIVGRYFIEEGIGFVVPDDSRLNFDILISE
KYDHQTVRMGAVVVVELLKRPEYRKKAVGKITEVLGDNMGTNLAIEIAIRNHEIPYEFPA
DVEKAVSKLSETVSAQAKKGRKDLTSLPLVTIDGEDARDFDDAVYCTKNKGGGYRLWVAI
ADVSYYVRPQTALDKEACNRSTSVYFPSRVIPMLPEVLSNGLCSLNPQVDRLCLVCEMTI
SAKGRLTSYQFYEAVMNSHARLTYTKVQKILDGDEELREHYQPLVKDLENLYALYKVMDK
ARNIRGAIGFESAEPKFIFNADKRIERVEIAQRNEAHKIIEECMILANVSAAQLVEGLLI
PSLYRVHDKPDEDRLNNLRSVLSELGLVLDGGDKPTSKDVAKLMDAVADRPDRDMIQTLI
LRSMKQAIYDPENRGHFGLALESYAHFTSPIRRYPDLLLHRTIKWVLAKQNNKESKTGGH
RYEMSEMLYFGEHCSMNERRADEAVRDVVDWLKCDFMQDHVGEVYDGVISSVTNFGFFVR
LDELFIDGLVHVSTLENDYYNFDAGRSRLIGENSGFVYRLGDKVKVQVESVNPEERKIDF
SLIGSNNKPRRQGKTAKERTKKAALVPTSTDRQNKTQKKKRKNTTAKKSTEKRTAAKSSI
KKKKKSAK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggttaaagaccctttttatgatcgcgaagctgaaaaatatcaatcacctattgctagt
cgtgaactcattattagctatctagaaaagatcgcgaagccggcaaatttagataatatt
gcacaagcgatggaactcaaaaccgaagagcaaaaagaggcattacaccgtcgtttaaga
gcgatggaacgtgatgggcaggttatttttacccgtcgtaaatgttatgcactacctgat
aagttactaatggttaaaggtaaagtcatcgcacatcgtgatggatttggattcttaaga
gtagaggggcaaaccgaagattattatctatctcctgaacagatgaaaaaagcgctacaa
ggtgatattgttttagcacaaccgattggtagccaatataaaggcaaaacggaagctcgt
attgtacgaatccttgaacctcgtagtaaccagattgtgggacgctattttatagaagag
ggaatcggttttgtggtgccagatgatagtcgcttaaattttgatattcttatcagcgaa
aagtatgatcaccaaactgtacgtatgggggcggttgttgttgttgaattacttaaacga
cctgaataccgtaaaaaagccgttggtaaaattactgaagtacttggtgataatatgggt
actaatttagcaatcgagattgcgattcgtaaccatgaaatcccttatgaatttccggct
gatgtcgaaaaagctgtaagtaaattatctgagactgtttctgcgcaagccaaaaaaggc
cgcaaagatttaacatctctaccattagttaccattgatggtgaagatgcaagagacttc
gatgatgctgtttactgtactaaaaataaaggtggtggttatcgtttatgggttgctatt
gctgacgtaagttattatgttcgaccacaaacggcattagataaagaagcatgtaatcga
agtacatctgtatatttcccttctcgggttatcccaatgttaccagaagtgttgtctaat
ggactgtgttctcttaatccgcaagtcgataggttatgcttggtctgtgaaatgaccatt
tcagctaaaggacgactgacctcttatcaattttatgaagcagtcatgaattctcatgcg
cgcttaacttatactaaagtccaaaaaattcttgatggtgacgaagagttacgtgagcac
tatcaaccgttagtaaaagatttagaaaatctgtatgctctatataaagtgatggataaa
gcacggaatatacgaggggcaattggctttgaatccgctgaaccaaaatttatttttaat
gcagataaaagaattgagcgtgtcgagatcgctcagcgtaatgaggcgcataaaattatt
gaagagtgtatgatcctcgctaatgtatctgcggctcagttagttgaaggattgcttatc
ccatccctttatcgtgtgcatgataaacctgatgaagatagattaaataatctacgtagt
gtattgagtgaattaggtctggtattggacggtggcgataaaccgacgtcaaaagatgta
gcgaaattgatggacgcggttgctgatcgtcctgatcgtgacatgatccaaaccctaatt
ctgcgttcaatgaaacaagctatttatgatcctgaaaaccggggacattttggtttagcc
cttgaatcttatgcacattttacttcacctattcgtcgttatcctgatttattattacat
cggacaattaaatgggtcttggctaagcagaataataaagagagtaaaacaggtggccat
cgttatgaaatgagcgaaatgctctatttcggtgaacattgttcaatgaatgaacgtcgt
gctgatgaagcggtacgtgatgttgttgattggttaaaatgcgattttatgcaagaccat
gttggggaagtgtatgatggcgttatctccagtgttactaactttggtttctttgtccgc
ttagatgagctatttattgacggtctggtccatgtctcaacccttgaaaatgattactac
aattttgatgccggacgtagccgtttaattggtgaaaactcaggctttgtttatcgtctc
ggtgataaagttaaagtccaagttgaatcggttaatcctgaagagagaaaaattgatttt
agtttaataggtagtaataataaacctcgtagacaaggtaagaccgctaaggagcgcacg
aaaaaagctgcgttagtaccaacgtcaacagatcgtcaaaataagacgcaaaagaaaaag
cgtaaaaatacaactgctaagaaaagtactgaaaagcgtacagcagctaaatcatcaatt
aagaaaaagaagaagtcagctaaatga
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