Oxyplasma meridianum: OXIME_000562
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Entry
OXIME_000562 CDS
T10514
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
omr Oxyplasma meridianum
Pathway
omr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
omr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OXIME_000562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omr03021
]
OXIME_000562
Transcription machinery [BR:
omr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
OXIME_000562
Prokaryotic type
Archaeal type
TFB
OXIME_000562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Sigma70_r4
Zn_ribbon_LysW
Sigma70_r4_2
RB_B
Zn_ribbon_8
Zn_ribbon_tTFIIB
Ribosomal_S27e
Zn_ribbon_IS1595
Lar_restr_allev
Cas12f1-like_TNB
Trm112p
Motif
Other DBs
NCBI-ProteinID:
WYY00011
UniProt:
A0AAX4NEV0
LinkDB
All DBs
Position
541658..542587
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AA seq
309 aa
AA seq
DB search
MASKMSDDVSKRCPECNSEHLVKDYERGELTCNDCGMVLEDSIIDQGPEWRAFDSEQDDR
RARTGSPMTFLSHDKGLATEISWSNKDYYGKRIPHKNRAQIYRVRKWHQRIRVSNAAERN
LSLALQMLNDNGAKLGIPKDIKETAALIYRRAVEKNLIRGRSIESIVCASIYAACRMINL
PRTLDEISKASEVNKKKIGKAYRHLAKELSLNLKPTTPYSYIAQFCNKLELDKQAIVVSE
DIVRKSIELGISSGKGPTGVAAASIYIASVMVGKPRTQKEIARVSGVTEVTIRNRYKEIS
KHLGIPEME
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaaaatgagtgatgatgtgtcaaagagatgccctgaatgcaattctgagcat
cttgtgaaagattatgagaggggagaactgacgtgcaacgattgcggtatggtactggag
gattctattattgaccagggacctgaatggagggcttttgactctgaacaggacgacagg
cgtgcaagaacgggttcgccaatgacttttctcagccatgacaaaggtttggcaacggaa
atttcatggtccaacaaggactattatggaaaacgaattccgcataaaaatagagcccag
atataccgtgtaagaaaatggcatcagagaatcagagtaagcaatgcagcagaaagaaac
ctgtcccttgccctccagatgctcaatgataacggtgcaaagctcggaataccaaaggat
ataaaagagacggctgcccttatttaccgcagggcagtggaaaagaatcttatcaggggg
agaagcattgaaagcatagtgtgtgcttcaatttacgctgcttgcagaatgataaacctc
ccaaggactctggatgaaatatccaaggcttcagaggttaacaaaaagaaaataggaaag
gcatacaggcatcttgcaaaagagttgagcctgaaccttaaacctacaactccatattcc
tacattgcgcagttctgcaataaattggaactggacaaacaggcaattgttgtcagtgag
gatattgtgagaaaatccattgaactgggaatttcctcaggaaaagggccaacaggagtt
gcggcagcttccatatatatagcatcagtaatggtgggaaaaccaagaacacagaaagag
atagccagagtttcaggtgttacagaggtaacaatcaggaaccgttacaaagagataagt
aaacaccttggtattcctgaaatggaatag
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