KEGG   Oxyplasma meridianum: OXIME_000596
Entry
OXIME_000596      CDS       T10514                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
omr  Oxyplasma meridianum
Pathway
omr03030  DNA replication
omr03410  Base excision repair
omr03420  Nucleotide excision repair
omr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:omr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OXIME_000596
   03410 Base excision repair
    OXIME_000596
   03420 Nucleotide excision repair
    OXIME_000596
   03430 Mismatch repair
    OXIME_000596
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:omr03032]
    OXIME_000596
   03400 DNA repair and recombination proteins [BR:omr03400]
    OXIME_000596
Enzymes [BR:omr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OXIME_000596
    6.5.1.6  DNA ligase (ATP or NAD+)
     OXIME_000596
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OXIME_000596
DNA replication proteins [BR:omr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    OXIME_000596
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     OXIME_000596
DNA repair and recombination proteins [BR:omr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OXIME_000596
   NER (nucleotide excision repair)
    Other NER factors
     OXIME_000596
   MMR (mismatch excision repair)
    Other MMR factors
     OXIME_000596
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF4003 Pertactin
Other DBs
NCBI-ProteinID: WYY00043
UniProt: A0AAX4NFE0
LinkDB
Position
581685..583451
AA seq 588 aa
MLFSELTESFQAMGDTRKRLELTEILRKLFQNAGDDLPQLAYLLQGKVLPDYYGVEMGIA
DKLIIKALSHVSGKSEEEIQEDYTKTGDLGQVAYNVTERKTQKALFSTSMTLDYVYQSLL
KISKISGSGSIRVKTDIYTDLILNGTPADAMYITRIVSGKLRLGVSDATILDALALAFTD
SEKKEIATTAYNFHPDIGYIADLLRKGKIEDLEKIGPEPMIPMKVMLAERLPDIGDILAK
MEGTASLEYKYDGMRAQIHKKEKEVRIFSRSSEETTGQFPDIVKNVLSTFKADSLILDGE
AVPFNPETGDLYPFQAVSQRRGRKYHLDEISDDIPIVVFLFDILYKNGEPLQNLPYLKRR
EILKETFQEDNSFKLSSSLVTSNKDEAEKFIEESISSGCEGIVAKNITDKSIYRAGSRGW
LWIKYKRDYEANLGDSLDLVVIGAFSGHGRRKGTYGALLMASYNNETGIYQSVCKLGTGF
TDDVLFNLPKMFSEYTVKEKPANVQSGLIPDIWIIPNFVMEIVGSEITLSPIHSTAFGLI
KEKAGLAIRFPRFTGKWRNDKRPDDATTVNEIINMYKNQKKNIGNLLE
NT seq 1767 nt   +upstreamnt  +downstreamnt
gtgcttttttcagaacttacagaaagctttcaggcaatgggtgataccaggaaaaggctg
gaattgacagagatcctcagaaagttatttcaaaatgcaggtgacgatcttccccaactt
gcctatctgctgcagggaaaagtgttgcctgactattatggagttgaaatgggcatagca
gacaaacttataattaaagcactcagccatgtgtcgggtaagagtgaagaagagattcag
gaagattatacaaaaacaggagatctggggcaggttgcatataacgtcacagagaggaag
acacagaaagctttattttccacgtcaatgacacttgactacgtctaccagtcacttttg
aagatatcaaaaatctctggaagcggaagtataagggttaagactgatatatacactgat
cttatattgaacggcactccagccgatgcaatgtacattacaaggattgtcagcggaaaa
ttaagattgggggtatcggatgcaacgattcttgatgctcttgctcttgccttcacggat
tcagagaaaaaggagatagcaactaccgcttataattttcatccagatattggttacata
gctgatctcctaagaaaggggaagatagaagaccttgagaaaataggtccggaaccaatg
atacccatgaaggtcatgctggcggagagactcccggatattggagatatacttgcaaaa
atggaaggaaccgcatctcttgaatacaaatatgacgggatgagggctcagatacacaag
aaggaaaaagaggtaaggattttttccagaagcagcgaagagaccaccggccagtttcct
gacattgtaaaaaacgtactgagtactttcaaggctgattccctgattcttgatggagag
gcagtaccgtttaatccagaaacaggggatctatatccctttcaggctgtatcccagaga
agaggaaggaaataccatctggatgagatatctgatgatattcccatagttgtctttctc
tttgacattctttacaaaaatggagaacccctgcaaaatctgccatatctgaagaggagg
gagatactcaaagaaacattccaggaggacaatagcttcaagctttcgtcaagcctggtt
acttcaaataaagacgaggccgagaaatttatagaagaatccataagcagtggctgtgag
gggatagttgccaaaaacattactgataaatccatatacagagcaggttccagaggatgg
ttatggattaaatataagagagactatgaagccaatctcggtgatagccttgatcttgtt
gttattggtgccttttccgggcatggaagaagaaagggtacatatggagcactgctgatg
gcttcctataataatgaaacaggtatttaccagtctgtttgcaaactgggtactggcttc
acggatgatgtactgttcaaccttccaaagatgttttccgaatatacagttaaagaaaaa
ccagcgaatgtccaatccgggttgataccagacatatggattatacccaattttgttatg
gaaatagtaggatccgaaataacgttaagccctattcattccactgcctttggattaatc
aaggagaaggcggggcttgccataagatttccaagattcaccggaaagtggagaaatgat
aaaaggcccgatgatgccactacagttaatgaaataataaatatgtacaaaaatcagaaa
aaaaatattggaaatttgctggaataa

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