Oncorhynchus mykiss (rainbow trout): 100135778 Help Entry 100135778         CDS       T07259                                  Symbol col1a1 Name (RefSeq) collagen 1a1 precursor   KO K06236   collagen type I alpha Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04510   Focal adhesion omy04512   ECM-receptor interaction omy04518   Integrin signaling omy04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:omy00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100135778 (col1a1)    04518 Integrin signaling     100135778 (col1a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     100135778 (col1a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     100135778 (col1a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:omy00536]     100135778 (col1a1) Glycosaminoglycan binding proteins [BR:omy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100135778 (col1a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  100135778 NCBI-ProteinID:  NP_001117649 Ensembl:  ENSOMYG00000020647 UniProt:  Q910C0 LinkDB All DBs Position 12:complement(66764747..66785851) Genome browser AA seq 1449 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQFYNDRDVWKPEPCQICVCDSGT VMCDEVICEDTSDCPNPVIPHDECCPICPDDGFQEPKVEGPQGDRGAKGEPGPAGFPGND GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGGMSMPGPMGPMGPRGPPGPPGS SGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGDDGESGKPGRPGERGASGPQGARGF PGTPGLPGIKGHRGFSGLDGAKGESGPAGPKGEGGASGENGAAGAMGPRGLPGERGRAGP NGAAGARGNDGAAGAAGPPGPTGPAGAPGFPGGPGAKGEVGAQGARGGEGPQGSRGEAGN PGPAGAAGPAGNNGADGNPGTKGAPGSSGIAGAPGFPGPRGPPGPQGAGGAPGPKGNTGE VGANGAKGEAGAKGESGPAGVQGPAGPAGEEGKRGGRGEPGGAGARGAPGERGAPGSRGF PGSDGASGPKGGPGERGGAGVAGAKGNTGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP SGAGGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPSGAVGAPGKDGD VGAPGAPGVAGPSGERGEQGAGGPPGFQGLSGPQGAIGETGKPGEQGLPGEGGAPGSAGS RGDRGFPGERGAPGPSGPAGARGSPGSAGNDGGKGEAGAAGAPGGQGPPGLQGMPGERGA GGLPGLKGDRGDQGVKGADGAGGKDGVRGMTGPIGPNGPAGSPGDKGETGAPGAVGPSGA RGAPGERGESGAPGPAGFAGPPGGDGQPGAKGEAGDNGAKGDGGAQGPAGPTGAPGPQGP AGNTGAKGARGAAGPPGATGFPGAAGRFGPPGPSGNNGPPGTPGPGGKEGQKGNRGETGP AGRPGELGAAGPPGPKGEKGQPGGDGPNGPSGTPGPQGIGGQRGIVGLPGQRGERGFPGL AGQLGEPGKQGPGGPFGERGPPGPMGPPGLAGAPGEPGREGTPGNEGSSGRDGAAGPKGE RGESGVAGASGAPGPPGAPGAVGPAGKSGDRGESGPAGPAGIAGPAGPRGPSGPAGARGD KGESGEAGERGMKGHRGFTGMQGPPGPSGQSGESGPAGASGPAGPRGPSGSAGAAGKDGM SGLPGPIGPPGPRGRSGEMGPSGTPGPPGPPGPPGPPGGGFDMGFIAQPAQEKAPDPFRH FRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTKKNPARTCRDLKMCHPDWKSGEYW IDPDQGCTQDAIKVYCNMETGETCVYPTEADIPKKSWYTSKNIKEKKHVWFGEAMTDGFQ FEYGSEGSNAKDVNIQLTFLRLMATEASQNITYHCKNSIAYMDQQSGNLKKSLLLQGSNE IEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFG IEVGPVCFL NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgttgctcagcgcaacagtgcttttggca agaggacaaggcgaggacgatcgcactgccggcagctgtacgttggacggtcaattctac aacgacagagatgtctggaaacccgagccatgccagatctgcgtgtgcgatagcggcacc gtcatgtgcgacgaagttatctgcgaggacacatccgactgccccaatccagtgatcccc cacgacgaatgctgccccatctgccccgacgacggcttccaggagccaaaggttgaggga ccccagggtgatcgtggagccaagggagagccaggacctgctggtttccccggcaacgat ggtattcccggccagcccggccttcctggacccccaggcccccctggaccccctggtctt ggcggaaacttctcccctcagatgtctggtggttttgatgagaagagcggcggtggcatg tccatgcccggccccatgggccccatgggtccccgtggtcccccaggacctcctggctca agtggacctcagggtttcactggcccccctggtgagcctggtgaggctggttcttctggt cccatgggcccccgtggtcctgctggtccccctggcaagaacggagatgatggtgagtct ggcaagcctggtcgccccggtgagcgtggagcttccggcccacagggagctcgtggattc cccggaacccccggccttcccggcatcaagggacacagaggattcagcggtcttgacgga gctaagggagagtctggccctgctggacccaagggagagggtggtgcatccggtgagaac ggagccgctggagccatgggaccccgtggtctgcctggtgagagaggccgtgctggtccc aacggagctgctggtgctcgtggtaacgatggtgctgctggtgctgctggtcctcctggc cccactggccccgctggtgcccctggtttccccggtggccctggagccaagggagaggtt ggtgcccagggagctcgtggtggcgagggaccccagggatcccgtggagaggctggtaac cccggacccgctggcgctgctggccccgctggaaacaacggtgctgacggaaaccccggt accaagggtgcccctggttcttctggtattgctggtgctcctggcttccctggaccccgt ggaccccccggaccccagggtgctggtggagctcccggacccaagggtaacactggtgag gttggtgctaatggagccaaaggagaggctggtgctaagggagagtctggccccgctgga gtccagggacccgccggccctgctggtgaggaaggcaagcgaggaggccgtggtgagccc ggtggtgctggtgcccgtggagcccccggcgagcgcggtgcccctggtagccgtggtttc cctggttctgatggagcttctggccccaagggtggccctggtgagcgtggtggtgccgga gttgctggagctaagggtaacactggtgagcctggccgcaacggcgagcctggtatgcct ggatccaagggtatgactggtagccctggcagccccggtcccgatggcaagactggcccc tctggtgccggtggtcaagatggtcgccccggacctcccggccccgttggagccagaggc cagcccggagtcatgggattccccggacctaagggagccgcaggtgagggtggcaagcct ggtgagagaggagtcatgggacccagtggcgctgttggcgctcccggcaaagatggtgat gttggtgctcctggtgcccccggtgttgccggaccttctggagagcgaggcgagcaggga gccggtggcccccctggattccagggactttcaggaccccaaggtgctattggtgagact ggcaagcccggagagcagggtcttcccggtgagggtggtgcccctggttccgcaggatcc agaggtgacagaggtttccccggtgagcgtggtgcccctggcccatctggacccgctggt gcccgtggctctccaggttctgctggtaacgatggtggtaagggagaggctggtgccgca ggtgcccccggtggccaaggaccccctggcctgcagggaatgcccggagagcgtggtgct ggtggtctgccaggcctgaagggagacagaggtgaccaaggagtcaagggtgctgatggc gccggtggtaaggatggcgtccgtggtatgactggccccattggacccaacggccctgct gggtctcctggtgacaagggagagactggcgctcctggagctgttggaccttctggtgcc cgtggtgcacctggtgagcgcggtgagtctggtgcccccggacccgccggattcgctggg cctcctggtggtgatggccagcctggtgctaagggagaggctggagataacggtgccaag ggtgacggtggtgcccaaggacccgctggacctactggagcccctggacctcagggtccc gctgggaacaccggagctaagggcgcccgtggtgctgctggtccccctggtgccactggt ttccccggtgccgctggtagatttggacctcccggcccatcgggcaacaacggacccccc ggaaccccaggccctggtggaaaggaaggacagaagggtaaccgtggtgaaactggcccc gccggtcgtcctggtgagcttggagctgccggaccccctggtcccaagggagagaaggga cagcctggtggagatggtcccaatggaccttctggaactcccggacctcagggtattggt ggacagcgtggtattgttggtctgcctggacagagaggcgagcgcggtttccccggcctc gccggacaactgggagagcctggcaaacagggacctggtggcccctttggtgagcgtgga ccccccggacccatggggccccctggactggctggagcacctggtgagcctggtcgtgag ggaactcctggtaacgagggatcttctggtcgcgatggtgctgctggacccaagggagaa cgtggtgagtctggtgttgccggtgcttccggtgcccccgggccccctggtgcccctgga gccgtcggccctgctggaaagtctggtgaccgtggagagtctggtcctgctggccccgct ggtattgctggccctgctggtccccgtggcccatctggacctgctggagctcgtggagac aagggagagtctggcgaggctggagagcgaggcatgaagggacacagaggattcactggc atgcagggaccccctggcccctctggacaatctggagagtcaggacctgctggagcctct ggccccgctggacctagaggaccttctggatcagctggtgccgccggtaaggatggtatg agcggtctgcccggccccatcggacctcccggaccccgtggtcgctctggagagatggga ccttccggaacccctggccctcccggtccccctggcccccccggacctccgggcggtgga ttcgacatgggcttcattgctcagcccgctcaggagaaggcccccgatcccttccgtcac ttccgcgccgacgacgcaaacgtgatgcgcgaccgcgacctggaggtagacaccaccctc aagagcctgagccagcagattgagaacattcgttctcccgagggcaccaagaagaacccc gcccgcacctgcagagacctgaagatgtgccaccccgactggaagagcggcgagtactgg atcgaccccgaccagggctgcacccaggacgccatcaaggtttactgcaacatggagacc ggcgagacctgcgtctacccgaccgaggctgatatccccaagaagagctggtacaccagt aagaacatcaaggagaagaagcacgtctggttcggcgaggcaatgaccgatggcttccag ttcgagtatggcagtgagggctccaacgctaaggatgttaacatccagctgaccttcctg cgccttatggccaccgaggccagccagaacatcacataccactgcaagaacagcatcgcc tacatggaccagcagtccggcaacctgaagaagtccctgcttctccagggctccaacgag atcgagatcagagccgagggcaacagccgcttcacatacagcgtcaccgaggacggctgc acgtcgcacaccggtgcatggggcaagacagtcatcgactacaagacaacgaagacatcc cgtctgcctattattgacatcgctcctatggacgttggtgcacccaatcaggaatttggc attgaagttggcccagtctgcttcttgtaa

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