Oncorhynchus mykiss (rainbow trout): 100135944
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Entry
100135944 CDS
T07259
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04137
Mitophagy - animal
omy04140
Autophagy - animal
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100135944 (hif1a)
04137 Mitophagy - animal
100135944 (hif1a)
04148 Efferocytosis
100135944 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
100135944 (hif1a)
Transcription factors [BR:
omy03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
100135944 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
100135944
NCBI-ProteinID:
NP_001117760
Ensembl:
ENSOMYG00000033186
UniProt:
Q98SW2
LinkDB
All DBs
Position
19:complement(40353876..40375782)
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AA seq
766 aa
AA seq
DB search
MDTGVVPEKKSRVSSDRRKEKSRDAARCRRGKESEVFYELAQELPLPHSVTSNLDKASIM
RLAISYLHMRNLLSTDNEEEQEEREMDSQLNGSYLKAIEGFLMVLSEDGDMIYLSENVNK
CLGLAQIDLTGLSVFEYTHPCDHEELREMLVHRTGTSKKSKEPNTERSFFLRMKCTLTNR
GRTVNVKSATWKVLHCSDHVRVHESPAEQIPGGHKEPSVPYLVLVCDPIPHPSNIEAPLD
TKTFLSRHTLDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLMKTHHNLFAKG
QVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLSGIEEEKMMLSLEQTE
DMRPVKKELEEEESSEPEVSPVLLKEEKSPELDVIKLFTRAVETQPLSSLYDRLKEEPEA
LTLLAPAAGDTIISLDFSSPDSDILQKEVPLYKDVMLPSTSDKLALPLSLLPPSDQHLVP
NTSVDTTEVSTGPDSSSTPGSHSFTEPDSPLDFCFPMESDINAEFKLDMVETLFAINPEP
KTPFTLQAMEDLDLEMLAPYIPMDDDFQLRTLSPEEPLSCGPAQPLECSSLCSSVRLTQE
VHSYPGSPFNAPGSLTASPALAASPALAAPEPADSPCPASLLTKTVPQMDREISLRSLAS
QNAQRKRKMSLSQAVGIGGLLQDHPGPGKKLKVSELSHADAPFNRTILLLPTDLASRLLG
ISSEGSGSPFTLPQLTRYDCEVNAPVGGRQLLLQGEELLSALDQVN
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggagttgtccccgaaaagaaaagcagggtgagctcggaccggaggaaggag
aagtcccgggatgcggcgcgatgcaggagggggaaggaatctgaggtgttctacgagctg
gcccaggagctgcccctgccccacagcgtcacctccaacctggacaaggcctccatcatg
agactggccatcagttacttgcacatgaggaatctgctgagcacagacaatgaggaggag
caggaggagagggaaatggactcccagctgaatggatcctatctgaaggctatagagggc
ttcctcatggtgctgtctgaggacggggacatgatttatctctctgagaatgtcaacaag
tgcttgggtctggcacagattgacctgacaggacttagtgtgtttgagtacacacacccc
tgtgaccatgaggagctgagagagatgctggtacacagaacagggacctctaaaaagtcc
aaggaaccaaacacagaacgcagcttcttcttgcggatgaaatgtaccctcaccaacagg
gggcgcactgtcaatgtcaaatcagccacctggaaggttctccactgctcagaccatgtg
cgggtccatgaatccccagctgagcagatccccggtgggcacaaggagccgtccgtcccc
tacctggtgctggtctgtgaccccatcccccacccctccaacatcgaggcgccgctggac
accaagactttcctcagccgccacacactggacatgaagttcacctactgtgatgagagg
atcactgagctgatgggttatgatccagaggacctgttaaatcgctctgtgtatgagtac
taccacgccctggactcagaccacctcatgaagacccatcacaacttgtttgcgaagggt
caggtgagcacaggccagtaccgcatgctggctaagagaggaggctttgtgtgggtggag
actcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtgtgtgtc
aactatgtgctcagtggcattgaggaggagaagatgatgctgtctctggagcagacggag
gatatgaggcctgtgaagaaggagctggaggaggaggagagctctgagccagaggtgtcc
cctgtgctcctgaaggaggagaagagcccagagctggatgtgatcaagctgttcacccgg
gcggtggagacccagcccctgtccagcctgtatgaccgactgaaggaggaaccagaggcc
ctcacccttctggccccggccgctggagacaccatcatctccctggacttcagcagcccc
gactctgacatcctgcaaaaggaggtgcctctctacaaggatgtgatgctgccctccacc
agtgacaagctggccctgccactctctctgctgccccccagtgatcagcacctggtcccc
aacacctcagtggacaccactgaggtgtccactggtccagactcctccagcaccccaggc
agccacagcttcactgagcctgacagcccattggacttctgtttcccaatggagtctgac
atcaatgctgagtttaaactggacatggtggaaacactgtttgccatcaacccagagcca
aagactcctttcaccttacaggccatggaggacctggacctggagatgttggctccgtac
atccccatggatgatgacttccagctgcgcaccctgtccccagaggagcctctgtcttgt
ggcccagcccaacccctagagtgctcttctctgtgctcttctgtgcgcctcacccaggag
gtccacagctaccctggctcccccttcaatgccccaggcagcctgacagcttccccagcc
ctggcagcgtccccagccctggcagctccggagccagcagatagcccttgccctgcttcc
ttactcaccaagacggtgcctcagatggacagggagatctcccttaggtcactggcctcc
cagaatgcacagcgcaagaggaagatgtctctgtctcaggctgtcggaatagggggattg
ctccaagaccatcctggtccaggtaaaaagctcaaagtatctgagctgagccacgctgat
gctcccttcaacaggaccatactgcttctgcctacagacctggcaagccgtttgcttggc
atctcatcggagggcagcgggtcacccttcacccttcctcagctgacccgatatgactgt
gaggtcaacgcccccgtggggggtcgccagctcctgctgcagggcgaggagctcctgagt
gccctggaccaagtcaactga
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