KEGG   Oncorhynchus mykiss (rainbow trout): 100136054
Entry
100136054         CDS       T07259                                 
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013  Nucleocytoplasmic transport
omy03015  mRNA surveillance pathway
omy03040  Spliceosome
omy05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100136054
  09122 Translation
   03013 Nucleocytoplasmic transport
    100136054
   03015 mRNA surveillance pathway
    100136054
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100136054
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omy03019]
    100136054
   03041 Spliceosome [BR:omy03041]
    100136054
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100136054
    TREX complex
     100136054
Spliceosome [BR:omy03041]
 Complex C
  Other components
   EJC/TREX
    100136054
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100136054
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 100136054
NCBI-ProteinID: XP_021413942
Ensembl: ENSOMYG00000028642
UniProt: A0A8C7S925
LinkDB
Position
13:46179912..46183380
AA seq 265 aa
MSDKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGVGRGGGVGRGAAAGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQIPDKWQHDMYGNHGFNASVGGGAGVETGGKLLVSN
LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD
GRPMNIQLVTSQIDTQRRPPMQGMNRGGGGMNRGRGGGFRGMQRGRGAGRGGGRGRGGRG
GSTKPLSAEELDAQLDAYNARMETS
NT seq 798 nt   +upstreamnt  +downstreamnt
atgtctgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgtgggc
cgaggtggtggtgttggccgtggagcagctgctggaggctttgggggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcccaagcagattcctgataaatggcaacacgacatgtacggcaatcatggcttc
aatgccagtgttgggggtggcgctggtgtggaaaccggagggaagcttcttgtctccaat
ctcgacttcggcgtttcagacgcagatattcaggagctctttgcggagtttggtacactg
aagaaggcagctgttcactatgaccggtcgggcaggagcttaggcactgcagatgtccac
tttgagaggaaggcagatgctctaaaagctatgaaacagtacaacggtgtaccacttgat
gggcgtcccatgaacatacaacttgtcacatcacagatcgacacacaaagacgaccaccc
atgcagggtatgaatcgaggaggtggtggcatgaacaggggtcgtggtggtgggtttaga
gggatgcagagaggacgtggagcaggacgtggaggaggcaggggccgaggtggccgcggg
ggaagcactaagccactttccgctgaagagctggatgcccagttagatgcctacaatgcc
aggatggaaacaagctaa

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