Oncorhynchus mykiss (rainbow trout): 100136186
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Entry
100136186 CDS
T07259
Symbol
aptx
Name
(RefSeq) aprataxin
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100136186 (aptx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omy03400
]
100136186 (aptx)
Enzymes [BR:
omy01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
100136186 (aptx)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
100136186 (aptx)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
100136186 (aptx)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
100136186 (aptx)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100136186 (aptx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
FHA_2
zf-C2HE
HIT
FHA
zf-C2H2_4
zf-C2H2
zf-C2H2_6
Methyltransf_4
Motif
Other DBs
NCBI-GeneID:
100136186
NCBI-ProteinID:
NP_001117934
Ensembl:
ENSOMYG00000009236
UniProt:
Q6EF50
LinkDB
All DBs
Position
6:10384908..10386345
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AA seq
348 aa
AA seq
DB search
MSICLLISKNGRHKPINLPHLQTVVLGRSPETTIKDKKCSREQVELKADCNKGYISVKQL
GVNPTSVDSEVVGKGNQVEMRSGQQLHMVNELYPYTVCFKEDPSNSQSSVGTKRPCGPAS
EEREFHREPPGHKVPRKTEDSTQCKHGGSTSTNTRPEPQTTEKTETLGYWSQGLKASMQD
PKMQVYKDDRVVVIMDKYPKAHYHWLVLPWESIPSLKTLHRGHCDLLRHMNQVADRIVQQ
QCPDAGLLHFRQGYHAIPSMSHVHLHVISQDFDSPWLKNKKHWNSFTTDYFIESQEVIQM
LEKDGKVTVKQGTNELLKLPLCCHVCGMALSTIPQLKEHLKSHPYGRL
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttgtttgctgatcagcaaaaatggaaggcataaaccgattaatctacctcac
ctacagacagttgtcttgggtcggagtccagaaacaacgataaaagacaaaaaatgttcc
agggagcaagttgagctcaaggctgactgcaacaaagggtatatcagtgtaaaacaactg
ggtgtcaaccccactagtgtggactctgaggtggtgggtaaaggcaaccaagtggagatg
agatctggccagcagctgcacatggtcaatgagctgtacccttatactgtgtgcttcaaa
gaggatccatccaactctcagtccagtgtgggcaccaagaggccctgtgggcctgcctca
gaggagcgggagtttcacagagagccccccgggcataaagtaccaaggaaaacagaggac
tccactcagtgcaagcatggagggtccacctccactaacacacggcctgaacctcaaaca
acagagaaaacagaaactttaggatattggagccaaggattgaaagcctcaatgcaagac
cccaaaatgcaggtctacaaggatgacagagtagttgttatcatggacaagtaccccaag
gctcactaccactggctggtcctgccctgggagtccatccccagtctgaagacactgcac
agggggcactgtgatctgttgaggcacatgaatcaggtagcagacaggattgtacaacag
cagtgccccgatgctggcctgttacacttccgccagggctaccacgccatccccagtatg
agccatgtccatctacacgtgatcagccaggactttgactccccttggttaaagaacaag
aaacactggaattcattcacaaccgactatttcatagaatctcaagaagtcatccagatg
ctggaaaaggatgggaaggtcacggtaaaacaagggacaaatgagttgttgaaactacct
ctctgctgtcacgtgtgtggcatggcgctgtccaccataccacaacttaaggagcatctg
aaatctcacccctatggtagattgtga
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integrated database retrieval system