Oncorhynchus mykiss (rainbow trout): 100305317
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Entry
100305317 CDS
T07259
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
omy03037
]
100305317 (ift88)
Cilium and associated proteins [BR:
omy03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
100305317 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_14
TPR_6
TPR_19
TPR_16
TPR_7
TPR_11
ANAPC3
ARM_TT21_5th
TPR_9
TPR_10
SNAP
TPR_CcmH_CycH
TPR_17
TPR-S
ARM_TT21_4th
TPR_15
MIT
ARM_TT21_N
RPN7
HAT_PRP39_C
Coatomer_E
TPR_MalT
ARM_TT21_2nd
SHPRH_helical-1st
ARM_TT21
DUF6584
ARM_TT21_C
SPO22
RNPP_C
Motif
Other DBs
NCBI-GeneID:
100305317
NCBI-ProteinID:
XP_036830826
LinkDB
All DBs
Position
3:65362736..65386706
Genome browser
AA seq
862 aa
AA seq
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MEHVHLAAEEDDLYSGYNDYNPTFDSEELDNDAGFQQAVRTSHGRRPPMTAKFPGTAIGG
RALGTSFGSRMPMASSMGRPMTGAVQDGAARPMTAVRAAGYSSAMTRGSTFDPLGQSKGP
APPLEGKSEDTPDEKVKILEKKVNDLIEESCLAHGHGDLQLSLDRAKEAGRKERALVRQR
EQSGNADHINLDLTYSVLFNLATQYANNDMYAEALNTYQVIVKNKMFSNAGRLKVNMANI
HFKQKNYPKAIKLYRMALDQISNSHKEMRIKIMQNIGVVFIRMGQYSDAITSFEHIMSEC
PNIKTGFNLILCYYAIGDRERMKKAFQKLICVPLGIDEEDKYIPPNDDTHANLVIEAIKN
DKLHQMERERKALAEKFIMTSAKLIAPAIEATFAAGFDWCVDMVKSSQYVELANDLEINK
AITYLRQRDFNQVGAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAMTA
DRYNPAALINKGNTVFVKKDYEKAAEFYKEALRNDSSCTEALYNLGLTYKRLGRLEESLD
CFLKLHAILRNSAQVMWQLASLFEMLEDPHQAIEWLMQLITVTPTDPQVLAKLGELYDSE
GDKSQAFQYYQESFRYFPSNIDVIEWLGAYYIDTQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMGMKEVQDYATKLKKVEKM
KEIREQRVKSAREGSARGTRREGSASSVCTPDPVRHPPKKDSEVVIKAVSQPEPKHSPLL
AQGRDSGHSSHGTSAKGERLSAKMRALPGSNEPYEASSQRDIDASYVDPLGAPMERPKTA
AKKRNEEDEFADEELGDDLLPE
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgtacatcttgctgctgaggaagatgacctgtactctggctacaacgactac
aatccaacatttgattcagaggagcttgacaatgatgctggttttcagcaagcagtcagg
acaagccatgggagaaggccccccatgactgccaagtttcctggcactgccattggagga
cgggctttggggacctcttttggatctaggatgcccatggcctcatctatgggcagaccc
atgactggagctgtacaggatggagcagctaggcctatgactgcagtcagagcagcaggc
tactcttcagccatgaccagagggtctacatttgacccactgggtcagtccaaaggaccg
gctcctccattggagggcaaaagtgaagatacgccggatgagaaggtgaagatcctggag
aagaaggtgaacgacctgatagaagagagctgtctggcacatggccatggagacctacag
ttgtcccttgatagagccaaagaggcagggcggaaggagagagcgctggtcagacagagg
gagcagtcaggcaatgcagaccacatcaacctggacctcacatactctgtcttgtttaac
ttggcaactcagtacgccaacaatgacatgtacgcggaggctctgaacacttaccaggtc
atcgtaaagaacaagatgttcagtaatgcaggaagattaaaagtgaacatggccaacatc
cacttcaagcagaaaaactaccccaaggccatcaagttgtaccgcatggccctggaccag
atctccaactcccacaaggagatgaggatcaagatcatgcagaacatcggtgtggtcttc
atccgcatgggccagtactctgacgccatcacctcctttgaacacatcatgagcgagtgc
cccaatattaagacaggctttaacctgatcctgtgttactacgccatcggagaccgagag
aggatgaagaaggcctttcagaagctcatctgtgttcctctggggatcgacgaggaggac
aagtacatcccacccaacgatgacacccatgccaacctggttattgaagccatcaagaac
gacaaacttcaccagatggagagagaacgtaaagccctggctgagaaattcatcatgaca
tcagccaaactcatcgccccagccatcgaggcgacgttcgccgccggatttgactggtgt
gtggacatggtgaagagttcccagtacgtagaactggccaatgacctagaaatcaacaaa
gccatcacctacctgagacagagggacttcaaccaggttggtgctgtggagactctgaag
acgtttgagaagaaagacagcagagtgaagagtgctgcagccactaacctctccttcctc
tacttcctggagaaagactatgaccaggctgaccgctatgccgacctggccatgacagcc
gaccgctacaacccagcggcgctcatcaacaagggcaacacagtgtttgtgaagaaggac
tatgagaaggctgcagagttctacaaggaggctctccggaacgactcgtcctgcactgag
gccctatataacttaggtcttacctataagcgtctggggcgtctggaggagtctctggac
tgtttcctgaagctccacgccatcctgaggaacagcgcccaggtcatgtggcagctagcc
agcctctttgagatgttggaggatcctcaccaggccatagagtggttgatgcaactgatc
actgtgacgcccacagacccccaggtgttggccaaactgggagagctctacgacagtgag
ggagacaagtctcaggcgttccagtactaccaagagtccttcagatatttcccctccaac
attgacgttattgagtggctgggggcctactacattgacactcagttctgtgagaaggcc
atccagtactttgagagagccacactaatccagccaactcaggtgaaatggcagcttatg
gtggccagctgctacagaagaagtggaaactaccagaaagccctggagacttacaaagac
atccatcggaaattcccggaaaacgttgaatgcctgcgtttcctggtgaggctgtgcaca
gacatggggatgaaagaggtccaggactacgccaccaaactgaagaaggtggagaagatg
aaagagatcagagaacagcgggtgaagtcggcaagggagggcagcgctcgaggcacccgg
agagagggcagcgccagcagtgtctgcactccagaccctgttcgccacccgccaaagaag
gacagcgaggtggttatcaaagcagtctctcagcctgagcctaaacacagtcctctgctg
gcccaagggagagacagtggacacagcagccatggcaccagcgccaagggggagaggctg
agcgccaagatgagggcactgcctggctccaacgaaccctacgaggccagcagccagcga
gacatagatgcctcctacgtggatccactgggggctccgatggagagaccaaagactgca
gctaagaagcgcaatgaagaggacgagtttgctgatgaagagctgggagatgacctacta
ccggagtag
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integrated database retrieval system
