Oncorhynchus mykiss (rainbow trout): 100499612
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Entry
100499612 CDS
T07259
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04622
RIG-I-like receptor signaling pathway
omy05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
100499612 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
100499612 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
omy04054
]
100499612 (ifih1)
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100499612 (ifih1)
Pattern recognition receptors [BR:
omy04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100499612 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100499612
NCBI-ProteinID:
NP_001182108
Ensembl:
ENSOMYG00000032070
UniProt:
D7F7W8
LinkDB
All DBs
Position
22:16501461..16519607
Genome browser
AA seq
1002 aa
AA seq
DB search
MAADKDNTTNISLIEDFRPRLRKLIEIEFVLDHLNFLDNDNKDLIRTKARKESNLKAVDL
LIDTIIRIRPLPKGWFREFVDALSAGGCKHAATYVEDSPPCPALEAENDNCVRLIELLSP
RLLGMKTTDVCWDCFSKGILTAEDREIILAECQNRGNMGGARELPRRIVRFPPGWFSTFL
KALQVTEHNDLCKELTGESPGDNLIDEPGVLMAVNEAPGNVYPMVEEGPVEAAGKSFLPE
QETLDSSVTNMHLDEPSEADSEIADLYSGTEEPMENGKPENSLDLSMSGCIAPAAESPPK
AVIVLRDYQMDVARPALEGKNIIICLPTGSGKTRVAVYITKEHLDSRRKEGRPGKVVVLV
NKVPLVEQHYSTEFWKFLKNKYKVERVSGDSQLKISFTDIVQKNDIVICTAQLLENYLER
AHSGDDDGIKLSDLSLIVIDECHHTQKGGVYNHIMIRYLKQKHKNAKLKKEQKDTVAIPQ
ILGLTASPGVGGAKKIEKAEEHILRICANLDAYKIMTGNLGENKKEPHKKIATAEERKED
PFGDVLKGVMNAIHIHAELNPTCDLGTQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYN
EALYLGKTIRMWDAFSFLDKYFDEELKKKVAPGDEEAIIKTDTERFLFTLFKDSKVELQE
LAKLPQYENNSLAKLRTKILHEFTSREKARGIIFTKTRRSAIALAQWVQENSKFEEVGVK
ACHVIGGGGQSAVKPMTAAEQRDVLNKFQNAEINLLIATTVAEEGLDIAACNFVIRYELV
TNEVAMIQARGRGRAEDSSYTLVAGEGSGVAERESVNEYREKMMSKAIDKVKKLDQEEYE
KRIKEFQIQAIMEERVRTTKKKQKGMKKESPSKVKFSCRSCNKPVCSGEDVEIIENMHRV
NVTPQFKELFIQRENTSLVKRLLDYETNGFIACKDCGQRWGSMMLYRGIECPCLHVKNFL
VTYDEKRKNVNKWSELGIQLPAFDYAEHARSVAESSEDEESM
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgacaaagataacaccaccaacatcagtctgattgaggacttcagacctagg
ctgcggaaactcattgaaatcgagtttgtactggatcacctgaacttcttagacaatgac
aacaaggacttgatccgaactaaggcgagaaaagagagcaatctaaaggcagtggatcta
cttattgatacaatcatcaggatccggccacttccgaaaggttggttcagggagtttgtg
gatgcactgtcagctgggggttgtaaacatgctgccacctacgtggaggatagccctcca
tgtcctgctctggaggcagagaatgacaactgcgtcagactaattgaacttctgtcgcca
aggcttttggggatgaagactactgatgtttgctgggactgtttttctaaaggtattctc
accgcagaggaccgtgaaattattttagctgaatgtcaaaaccgaggaaatatgggtggt
gctcgtgaactgcccaggagaatcgtgagattcccgcccggatggttctccaccttcttg
aaggccttacaggtcactgaacacaatgacctgtgtaaagaattgacaggggagtcacct
ggtgacaacttgatagatgagccaggtgtcctgatggctgtgaatgaagctccagggaat
gtgtatccaatggtggaggagggtcccgtagaagcagcggggaaatcttttctcccagag
caggagacattggatagcagtgtgaccaacatgcatctggatgaaccttcagaggctgac
tcagaaattgcagacctatatagtggcacagaagaaccaatggaaaatgggaaaccggaa
aatagcttggatctctcaatgtcaggctgtattgcccctgctgctgaaagccctccaaaa
gctgtcattgttcttcgagattatcagatggacgtggccaggcccgccttggagggaaaa
aacatcatcatatgcctcccgacaggaagtggtaaaaccagagttgctgtctatattacc
aaagaacatctggacagcaggaggaaagagggccgaccggggaaagtggtcgtcttggtt
aacaaggtgcccctggtcgagcagcattactccacagagttctggaagttccttaaaaac
aaatacaaagttgagagggtcagtggggactcccagctcaaaatctccttcacagacatt
gtccagaaaaacgatattgtcatctgtacagcccagcttctggagaactacttggaaagg
gctcacagtggagatgacgatgggattaaactttcagatttgtcactaattgtgatcgat
gagtgccaccacacacagaagggaggagtctataaccacatcatgatccgctacctcaag
cagaagcacaagaacgccaagttaaagaaagagcagaaggatacagtggccatcccacag
atcctaggcttgaccgcctcacccggcgtcgggggagccaagaaaattgaaaaagcagaa
gagcatattctacgaatctgcgcaaacttggacgcatacaaaataatgacggggaacctt
ggggaaaacaaaaaagaaccgcacaaaaaaattgccactgccgaagagagaaaagaggat
ccctttggcgatgttctcaaaggagtcatgaatgccattcacatccatgctgaactgaac
cctacctgtgacctaggcacccagaactatgagcagtgggtggtccagaaagaacaaaat
gctgcaaaagaggagaatcaaaaagtgcgagtttgtgctgagcatctacggcagtacaac
gaggccctgtacctaggcaaaaccatccgcatgtgggatgccttcagcttcctggacaaa
tactttgacgaggagctgaagaagaaagtggccccaggggacgaggaggccatcattaag
actgatacagagcgattccttttcacgctctttaaagatagcaaagtggaactgcaggag
ttggctaagcttccccagtatgaaaataatagcctagctaagctgagaaccaaaatcctg
catgagtttacatctagagaaaaggctagagggatcattttcacgaaaacccgtcgcagt
gccatcgcattagctcaatgggttcaggagaactccaagttcgaggaggtcggagtaaaa
gcttgccatgtgattggaggaggaggccagagtgccgtgaaaccaatgaccgctgcagaa
caaagggatgttttgaacaagtttcagaatgcggagatcaacttgctgattgcaacaaca
gtggctgaagagggtctggacatagcagcatgtaactttgtgatacgatatgagcttgtg
accaatgaggtcgctatgattcaggcccgaggcagaggcagagctgaggacagtagttat
accttagtggcaggggagggttctggggtcgctgaacgagagagtgtcaacgagtaccgt
gagaagatgatgagcaaagctatcgataaagtcaagaaattagatcaagaggaatatgaa
aagaggattaaagaattccagattcaggcgatcatggaggaaagagtgcgaacaaccaag
aagaagcagaaaggaatgaaaaaggagagcccgtccaaagtgaagttcagttgtagaagc
tgcaacaaaccagtctgctctggggaagatgttgaaatcattgaaaatatgcacagagtc
aacgtaacaccccaatttaaggaacttttcattcaaagagaaaacacctcacttgttaaa
aggctactggactacgagaccaatggtttcatagcatgcaaagactgtggacagaggtgg
ggttcaatgatgctctaccgtggaatcgagtgtccctgtcttcacgtcaagaacttcctg
gtgacgtatgatgaaaagaggaagaacgtcaacaagtggagcgagctgggtatccagtta
cctgcctttgactatgctgaacacgctcgatctgtggccgaaagctcagaggatgaagaa
tcaatgtaa
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