Oncorhynchus mykiss (rainbow trout): 110485139 Help Entry 110485139         CDS       T07259                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy03040   Spliceosome Brite KEGG Orthology (KO) [BR:omy00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     110485139  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:omy03019]     110485139    03041 Spliceosome [BR:omy03041]     110485139 Messenger RNA biogenesis [BR:omy03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      110485139 Spliceosome [BR:omy03041]  Complex B   Other components    Prp19-related factors     110485139  Complex C     110485139 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 TPR_2 Suf TPR_12 TPR_8 TPR_16 TPR_15 ARM_TT21 ARM_TT21_C NRDE-2 SNAP TPR_1 Motif Other DBs NCBI-GeneID:  110485139 NCBI-ProteinID:  XP_036796634 Ensembl:  ENSOMYG00000032670 UniProt:  A0A8K9XB30 LinkDB All DBs Position 13:complement(30825004..30850473) Genome browser AA seq 848 aa AA seqDB search MASLNGKPDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTMSILNMIYERALKELP GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSESVQNRVYKSLK VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR IKRSVQATYNTQVNFMSSQMMKATTNATISDLAPGQLGLDDMKLLEQQAQQLAAEAEQDK PKLKEKILFVRSDTSRSELAELAKQANPDEIDIEDEDGDDEDQGPEEVQLEQKSVPTAVF GGLKEGED NT seq 2547 nt NT seq  +upstreamnt  +downstreamnt atggcgtctctaaatgggaaaccggacgtaatatttgaggaagatgacctgccttatgag gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa caaaacggcacaatgtccatcctcaacatgatatacgaacgagctctgaaagagctacct ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc atgcacaagatgccgaggatatggctggactactgccagttcctggtgtctcagtgtaag atcaccaggagcagacgcacatttgaccgagcgctccgagcccttcccgtcactcagcac cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcggaggagtacatagat tacctgcgttcctgcggcaagctggatgaagcagcagtacgtctggcagccgttgtcaac gatgagagctttgtgtccaaggagggaaagtctaactaccagctatggcacgagctgtgt gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc atgatcgctgccaagatggagactacctcagagttggggaaagatgaagaagaggacata gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg aacagtgtgctgctgagacagaatccccacaacgtccacgagtggcataagagggtcaaa ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggggagatggagctacgc catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag aaggcagagtactttgacgtgtcagagtccgtgcagaacagagtgtacaagtctctgaag gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgtggcatc gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat ggctgtccagccaagttcgccaagactatctacctgctgtacgccaaactggaggaggag tttgggttggcgcgtcacgccatggcggtgtacgagagagctacgcaggcggtggacaac acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggtgtc acctacaccagagcgatctaccagaaagccatcgaggtgcttccagacgaacactccagg gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggcaga gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag acgtggaaggagtttgagatccgccacgggaacgaagacactatccgggagatgctgaga atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg atgaaggccaccaccaacgccaccatctcagaccttgccccgggccagctggggctggat gatatgaagctgttggagcagcaggcccaacagctggctgccgaggctgaacaggacaaa cccaaactcaaagagaagatcctcttcgtcaggagtgacacatctcggagtgagctggct gaactggccaaacaagccaaccccgatgagattgatattgaggatgaggatggtgatgat gaagaccagggcccagaggaggtgcagctggaacagaaaagtgtccccactgctgtcttt ggagggctgaaagaaggagaagattga

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