KEGG   Oncorhynchus mykiss (rainbow trout): 110485861
Entry
110485861         CDS       T07259                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110485861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:omy03021]
    110485861
   03036 Chromosome and associated proteins [BR:omy03036]
    110485861
Transcription machinery [BR:omy03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     110485861
   Coactivators
    SAGA/TFTC/STAGA complex
     110485861
Chromosome and associated proteins [BR:omy03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     110485861
    STAGA complex
     110485861
    TFTC complex
     110485861
    SAGA complex
     110485861
    SLIK complex
     110485861
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_HPS5 RMC1_N Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_like PEP5_VPS11_N Beta-prop_WDR75_2nd PROPPIN WD_LRWD1 Beta-prop_ELP1_1st Nbas_N Lysis_col
Other DBs
NCBI-GeneID: 110485861
NCBI-ProteinID: XP_021412736
Ensembl: ENSOMYG00000036888
LinkDB
Position
13:complement(20134097..20137740)
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGAAGAATTAPNSTSSWSGSDGPERGE
AAGVEVPTGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcattgccatggggccaggaggtgagctgcgtcctgtacccgctctttgtt
tatctccacctggacatggtgcgctgcagcttgaagggggcggtggatggcttctacagc
cgcttccacggcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgtcctcacccagcaggatgtcaacgccaaccctaagctcctggccttccttgaccac
aagtacgtggtaaacctgacggagccggcctacagttacttgttacgctatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtatgggacgacgggagcgggagccgccggggccgcc
accacggcccccaactctacctcctcgtggtcgggatcggatggccctgagcgaggggag
gcggcgggggtggaggtccccacagggatcccgcagagcgaggtggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccaccatcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggccgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtatcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcaggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctacttttccagcggc
tcccacgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagatgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagccttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacagacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccacgcggatagctcgtccagcgagctggtggggctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaagaaaaacatggacagtag

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