Oncorhynchus mykiss (rainbow trout): 110485965
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Entry
110485965 CDS
T07259
Symbol
trim25
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
110485965 (trim25)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110485965 (trim25)
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110485965 (trim25)
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110485965 (trim25)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
PRY
TRIM_CC
zf-RING_UBOX
zf-RING_2
zf-C3HC4_2
zf-C3HC4_3
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-RING_5
ANCHR-like_BBOX
U-box
YwqH-like
CCDC13
DUF3450
Motif
Other DBs
NCBI-GeneID:
110485965
NCBI-ProteinID:
XP_021412908
Ensembl:
ENSOMYG00000020594
LinkDB
All DBs
Position
13:22580737..22596273
Genome browser
AA seq
675 aa
AA seq
DB search
MAEDMFSLMSLEDELSCSICLCAFDCPVTIPCGHNFCQECLLETWKDNYSCPQCRTHFTT
KPELKKNTVLSTVVETFKMKSNKSDLPSEVGDLIKWDAVKMEPKEVAILCDTCMEAKAFK
TCLTCMASFCLEHVRPHHENPVFGAHQLNEPLGDLRDRICPDHHKLMEFYCVQHGRCICG
VCLQQVHKGCTFSNPDEQRALQESDLRGKLSMLNGKIDKNQTVISQMSDQQSKLKDSAAS
RKRALEDEYRQIRELLDRDEREALNTVDREQESAQTKLQNLIKKFNQNIAKLSAAKDGVD
SLLSQTQTVAFLQASVDMPAAVAFDPYTPKVNLDSKALAAWHAYSAVLREHLTFVLKQPV
EARLQILKPAERFAPPLLPNFYEMGGMPPPGHQRMPRSHSPGAPLRANQRKKPPQDSNRE
RKSDKKRDHKEGKEHKADKNPQKPPNAPREFATPVPHTPRDHPRGQSAEPRPRNREDPGQ
PSVLPSITSAAKRNDLLQYGTVLTFDLKTAHKRISLTENMTVASVSDEPTPYPDGPARFS
VCSQVLTSKGFSRGRHYWEVKMSSNNFTGIGLAYNSIDRKGPASRLGRNAQSWCVEWFNV
KLSAWHASSETVLQNPNPTRVGVLLDCEEGTATFYNVQDRAYPFHTFVFQFAEAVYPAFW
LFSSGSSVSLCKLQS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggatatgttttccctcatgagtctcgaagacgaactgagctgtagcatctgc
ctctgtgctttcgactgtccggtgacaattccatgtggacacaacttttgccaagagtgt
ctcctagaaacctggaaagacaactacagctgtccacaatgccggacccacttcaccacc
aaaccagagctgaagaagaacaccgttctcagcactgttgtggaaacgttcaaaatgaag
tcgaataaaagcgacctccccagtgaggtgggcgacttaatcaagtgggatgcggtcaag
atggagcccaaagaggtggctatcttgtgcgacacctgtatggaagccaaagcattcaag
acctgcctcacctgtatggcgtcattctgccttgagcacgtgaggcctcatcatgagaac
ccagtgtttggcgcgcatcagctgaacgagcctctgggcgacctgcgcgaccgtatctgc
cccgaccaccacaagctgatggagttctactgtgtccaacatggccgctgtatctgtggt
gtctgtctgcagcaggtgcataaaggctgtaccttctccaaccctgatgaacaacgggca
ctgcaagagtctgatttgaggggcaagttgagtatgctgaatggaaagattgacaagaac
cagactgtcatctctcagatgagtgaccagcagagcaagttgaaggactctgcagccagc
aggaagagagctctggaggacgagtaccgccaaatccgggagctgctggaccgtgatgag
cgtgaggctctgaacaccgtggaccgcgagcaggagagcgctcagaccaaactccagaac
ctcataaagaagttcaaccagaacattgcgaagcttagtgcggcaaaagatggcgtcgac
agcctgctcagtcagactcagaccgtggcttttctacaggcctcagttgacatgccggca
gcggtggcctttgacccctataccccgaaggtcaacctggactctaaggccttggcagcc
tggcatgcctactctgcagtcctgagggagcatctcacatttgtactgaaacagcctgta
gaggccagactgcagatactcaaaccagctgagaggtttgctcctcctctgctgccaaac
ttctatgaaatgggaggcatgccaccaccaggtcaccagagaatgcctcgatcccacagc
ccaggagcccccctcagggcaaaccagaggaagaagcctccacaagattcaaaccgagag
agaaagtcagacaagaaacgagatcacaaagaagggaaagaacataaggctgacaaaaat
ccccaaaagccacctaatgctcccagagagtttgccactcctgttccacacacaccaagg
gaccaccccagaggacaatcagcagaacccagacccaggaacagggaggacccaggacaa
ccaagtgttctcccaagtatcacgtctgcagcaaaacgaaatgaccttctgcaatatggc
acggttctcacctttgacctcaaaacagcccacaagcgcatctccctcacagagaacatg
accgtggcctctgtgtcagacgagcccaccccttaccccgatggccccgcccgtttctcc
gtctgcagccaggtgctcacttccaagggcttctcccgcggccgccactactgggaggtt
aagatgagcagcaacaacttcaccggcatcggcctggcctacaacagcatcgaccggaag
ggtccggctagccggctggggcgtaacgcccagtcctggtgcgtggagtggttcaacgtc
aagctgtcggcctggcacgccagcagtgagactgtactgcagaacccgaatccgacccgc
gtcggcgtgctgctggattgcgaggagggaacggccactttctataacgtacaggaccgg
gcatacccgttccatacgtttgtgttccagttcgccgaggcagtgtacccggcgttctgg
ctcttctccagcggctcgtctgttagcctgtgcaagctgcagtcttga
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integrated database retrieval system
