Oncorhynchus mykiss (rainbow trout): 110485986
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Entry
110485986 CDS
T07259
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110485986
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
110485986
3'-5' decay
Other 3'-5' decay factors
110485986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
zf-CCCH
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
AAA_16
PhoH
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
Motif
Other DBs
NCBI-GeneID:
110485986
NCBI-ProteinID:
XP_021412931
Ensembl:
ENSOMYG00000031926
LinkDB
All DBs
Position
13:complement(23442487..23499325)
Genome browser
AA seq
2013 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEVAVSHCTDALLALGPPAPPSPGTPTSNPPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEVMSLWSKVRDGWQFRPP
PRGVTSSEEYTLCKRFLEQGLCRYGAQCTSAHSREELMEWQKRYASRLIRLKQQQESKHF
TENYMEALIEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPVR
KLYRIALLYDAHRPHFSITAVSVGDAGAQRLQAAAEGCQEWTAGEEALAADNGMDHCVYT
VVVGFSTEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDP
SCKTIVEFSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEE
IAQYKEVSKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVM
TKVNSVLLLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDREL
QVELQFQLNRLPLCEMHYALDRIKDNGILFPDASLTPTIPWSPNRQWDEQLDPRLNAKQK
EAILAITTPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILRQDDSRVLICTHSNSAADLYI
KDYLHPYVEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRV
VVVTLSTSQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLS
PFVYSEFSRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMA
SGKQPSHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDE
GSIGVVSPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQT
AIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKF
ISICHENASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQPAQHPHHHHHHH
QHPHPQGHTASKQPGPQQQQQSPPKGKGQHANHTEHFPPEGFVQPNPAVLMGNPIRAFTP
PLGGTPGGMGKSPSPVQRIDPHTGASILYVPAVYGANMVMSMPLPSVPIQLPWPGYQNRF
AMDPRIMNHQAAMAYNLNLLQAQNRGSPIPYSGVAHPSPLGMGQQTSPDKELQTDSTRNG
KMDGSAKSEQSRLQTPERKTSEMKDKPGECDPGGGRSLDSQTDGLGFPNAMLHRKDNSSQ
RPLNYHLAPPNPAFAPHPVGRAFPPQYPGVSRLPFRVPSQHPGGGPAMGQSNQHHSAQLS
PAYDSGRHNPSFFGGVMASHRVVPETEEEGPEDMGNSMRSQMGHQGAHHPALSQPSRVNS
FGEENQEGGLGDGMDPLALEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLAR
FPPQLLARANWRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDPRDLAEMQPPPQSRLLQ
YRQVQSRSPGDPSSPSSATSNHTGPFPPGPYPGRDPTSHELDLLNNPGLQQHPGNQLYNP
NAYPHQLGHSTSPPPQVKYLLQEAQWPHGGAGVAQNHMLSQGQGFPYGLPVMAHPSRQEQ
VHLMQLHHQHHQQQQHQQQQQQQGPGQEPYHPLSPRTTGATALHNVEEYEPRGPGRPLYQ
RRISSSYPDEGSPANAAVMAQQQPQPCPADPQEHQHPHPHQHTHQHPHAPYGYPPPELWP
GNGGGPGPFQNIPCNGASTLVQHQHRDLLVASKALRQAAEEQMKAEAAAAVAAAQPPAHS
LQHLGQFPPLMPNSKQQPQQQQQQAPPEPGQGPGGPQNPGKPPTMSYASALRAPPKPRAR
PEQVKKHSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggtggcggtgagccactgcacagatgcgctgctggccctcggccccccggcc
cctcccagccctggaacccccacatccaacccccccaacgacacggttacccccctccgc
agccgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggccgaggagctggccaagggagacgggtcgtttcag
gccagcctgcgctgcatgctactggacggcagcctgcacgaagtggccggcctcctctcc
aagtccctgtttggggagcctctgaatggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtagcgaaatggctacagaatatacagacgac
aacgaggaagttatgtctttgtggtcaaaagttcgggatggatggcagtttcgccccccg
cctagaggagttaccagcagtgaggagtacacgctgtgtaaaaggttcctggagcagggc
ctgtgtcgctacggtgcccagtgcacgtcggcccactcccgggaggagctgatggagtgg
cagaagcgctacgcctcgcgcctcatccgcctcaagcagcagcaggagagcaagcacttc
accgagaactacatggaggcgctcatcgagaagtggatgaactctctctcccctgagaaa
gtgctgagtgactatttggacggcgtcaacgtggaacacagctccaacctctccgtaacg
gtcaccaccaagaaatcagctcactcctggaccttttccctgttctgcaagcctgtgagg
aagctgtaccgcatcgccctgctctacgacgcccaccgaccccacttttccatcacggct
gtgtcggttggcgacgccggcgcccagcggctgcaggcggcggccgagggctgccaggag
tggacggcgggcgaggaggcgctggcggccgacaacggcatggaccactgcgtctacacg
gtggtggtgggcttcagcaccgagatcttcggcaccttccgccagaccatcgtcttcgac
tttggctcggagcccgtgctgatgcagcgcatcatggtggacgccgcctccatagaagac
ctggagcacctaatgcaagccaggcagcagctcctgatgacggccaagcgctgggacccg
tcctgcaagacaatcgtggagttcagccccaacgagacggttgacctggaccgcagcctg
ctggctcgctaccagatccctctgtcggccgaccagctcttcacccagtcggtcctggac
aagaccctgacccgggacaactaccaggcccgcctgcacgacctgctctacatcgaggag
atcgcccagtacaaagaagtcagcaagttcaacatcaaagtcaacctccagctggtcacc
agcttcatgctgactggcatctcgggtggcgccaagtacgcccagaacggacagctcttc
gcccgcttcaagctgactgagactctgtcggaggacacactggcgggccgacttgtcatg
accaaggtgaactctgtcttgctgttgcccctggcccgccaggagtggtgcagccagccc
cctggggtcaaggagcgggtctacgaggcctgcatcgaggagaagaccaaggactacatc
ttcctgcggatatgcaaggactgctgcgaggagctggggttgatacctgacagggaactg
caggtggagctgcagtttcagttgaaccgcctgcccctgtgtgagatgcactatgctctg
gaccgcatcaaagacaacggcatcctgttcccagacgccagccttacccccaccatcccc
tggagccccaacaggcagtgggacgagcagctggacccgcgtctcaacgccaagcagaag
gaggccatcctggccatcaccacgcctctcaccatccccctgccccctgtgctcatcatc
gggccctacggcacgggcaagaccttcaccctggcacaggctgtcaagcacatcctcagg
caggacgacagcagggtcctcatttgcacccattccaacagtgcagctgacctgtacata
aaggactaccttcatccatacgtagaagcgggcaacgcgcacgcaagacctctcagggtt
tacttcaggaaccgctgggtgaagactgtccacccgttggtgcagcagtactgtttgatc
tctaacacacagtacactttccagatgcccgagagggaggacatcctcaggcaccgcgtg
gtggtggtcaccctcagcacgtcccagtacctctgccagctggacctggagccagggctc
ttctcccacatcctattggacgaggcggcccaggccatggagtgtgagaccatcatgcct
ttcgcgctggccagcaaaagcacccgcatcgtgctggctggagaccacatgcagctcagt
ccgtttgtgtacagcgagttttctcgagagcgcaacctgcatgtgtcgctgttggaccgg
ctgtacgagcactacccagccgagtttccctgccgcatcctgctctgtgaaaactaccgc
tcccacgaagcgatcatcagctacacgtcagaactgttctacgacgggaagctgatggcc
agcgggaagcagccgtctcacaaggacttctacccgctgaccttcttcacggcgcgcggc
gaggacgtccaggagaagaacagcacggcctactacaacaacgcagaggtgtttgagatc
gtggagcgggtggaggagatgcgcaagaagtggccggtggcgtggggcaagctggacgag
ggcagcatcggcgtggtgtcgccctacgccgaccaggtattccgcatccgcgccgagctc
cgaaagaagaggatgcacgaggtcagcgtggagagggtgctcaacgtccaaggtaagcag
ttccgggtgctcttcctgagcacagtgcgcacgcggcacacctgcaagcacaaacagacg
gccatcaagcgcaaggagcagctggtggaggactcgacagaggacctggactacggcttc
ctgtccaactacaagctgctcaacacagccatcactcgcgcccagtccctggtggccgtg
gtgggagaccccatagcgctctgctcggtgggccgctgcagaaagttctgggagaagttc
atctccatctgccacgagaacgccagcctgcacggcatcacctttgagcagatcaaggcc
cagctggaggcccttgagctcaagaagacctacgtgctcaacccgctggcgcccgagttc
atcccccgcgccctgcgtccccagccggcccagcacccccatcatcaccatcaccatcac
caacacccacacccccagggacacacggccagcaagcagcccgggccccagcagcaacag
cagtctcctccgaaggggaaaggtcaacatgcgaaccacacggagcacttcccacctgaa
ggatttgttcaacccaaccctgcggtgttgatgggcaaccccatccgggcgttcacgccg
cccctggggggcacccctggcggcatgggcaagtcccccagtcctgtgcagaggatagac
ccccacacgggcgccagcatcctctacgtgcccgccgtctacggggccaacatggtcatg
tccatgccactgccctctgtccccatccagttgccatggcccggctaccagaaccgcttt
gccatggacccacgcatcatgaaccaccaggcggccatggcctacaacctgaacctcctg
caggcccagaaccggggctcgcccatcccctacagtggagtcgcacacccttcccccttg
ggcatgggccagcagactagtcccgacaaggagcttcagacggattccaccagaaacggt
aaaatggacgggagtgcgaagtccgagcagagccggctacagacaccagagaggaagacc
tcggagatgaaggacaaaccgggagagtgtgatccgggcggtggtcggagtctggactct
cagacagacggactgggctttcccaatgccatgctccaccgcaaggacaactcaagccaa
agacccctcaactaccacctggcgccccccaacccggcctttgccccccatcccgtgggc
cgggccttccccccacagtaccccggtgtgtccaggctcccctttagggtgccgtcccag
cacccaggtgggggcccggccatgggccagtctaaccagcatcactcggcccagctatca
ccagcctacgacagcggcaggcacaatccctccttctttggtggggtcatggcctcccac
agggttgtgccagagactgaagaggaggggccggaggacatggggaattccatgaggtcc
cagatgggccaccaaggggcgcaccacccagccctgtcgcagcccagccgagttaacagc
ttcggggaggagaaccaggaaggaggcctgggagatgggatggaccccctagctctggag
gccctgagccagcaggcgcggctgggccagtggggtgagcccgggcccttcctccagggc
ggtgtggccttccctctgccccagcagctggcccatctggcccagcccggcctagcccgc
ttcccccctcagctgctggcacgggccaactggaggatgagcgccggtatggaggacgag
gctggcggaccgcctttcaccaggttcccaggcctcctgcgagagatgcccccccaggat
cagcccgatcccagggacctggcagagatgcagccccctccccagtcccgcctgctccaa
taccgccaggtccagtcccgctccccaggagacccctcctccccctcgtctgcaacctcc
aaccacaccggccccttcccccctggcccctatcctggccgagaccccaccagccacgag
ctggacctcctcaataacccgggtctccagcagcacccggggaaccagctctacaacccc
aacgcctacccccaccagctgggccactctacttccccgcccccgcaggtcaagtacctc
ctccaggaggcccagtggcctcacggcggagctggcgttgctcagaaccacatgctgtcc
cagggtcagggcttcccctacgggctgccagtcatggcccaccccagtagacaggagcag
gtccacctcatgcagctccaccaccagcaccaccagcagcagcagcaccaacagcagcag
cagcagcaaggcccaggccaggaaccctaccaccccctctcccccagaacaacaggtgcc
accgcccttcacaatgtagaagagtatgaacccaggggtcccgggcggcccctctaccag
cggcggatctcctccagctacccagacgagggatcccccgccaacgccgccgtcatggcc
cagcagcagccacagccctgcccggcagacccccaggagcaccaacaccctcacccccac
caacacactcaccaacacccccacgccccctacggttaccccccgcccgagctgtggccc
ggcaacgggggtggccccggcccgttccagaacattccatgcaacggagccagcacactc
gttcaacaccaacaccgggatctcctagtagcttccaaggccctgcggcaggcagcagag
gagcagatgaaggctgaagcggcagcagcagtagctgcggcccagcctcccgcccactcc
ctccagcacctcggacagttcccccctcttatgcccaacagcaagcagcagccgcagcag
cagcagcagcaagcccccccagagcccggccagggccctgggggcccccaaaaccctgga
aaaccccccaccatgtcctacgccagtgccctccgcgccccacccaaacccagagctcgc
cccgaacaggtcaaaaagcacagcgacccactttccctactccaagagctcagcatagga
agttcaaatggtagcaacggatactattcctattttaaatga
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integrated database retrieval system
