Oncorhynchus mykiss (rainbow trout): 110486043
Help
Entry
110486043 CDS
T07259
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110486043
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
omy04812
]
110486043
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
110486043
Membrane trafficking [BR:
omy04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
110486043
Cytoskeleton proteins [BR:
omy04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
110486043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
TIP49
Vps4_C
AAA_5
AAA_22
Mg_chelatase
IstB_IS21
AAA_16
DUF815
AAA_14
AAA_24
AAA_2
nSTAND3
NPHP3_N
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
110486043
NCBI-ProteinID:
XP_021413028
Ensembl:
ENSOMYG00000042783
LinkDB
All DBs
Position
13:complement(25109539..25141415)
Genome browser
AA seq
600 aa
AA seq
DB search
MSFPEGRSSRKKRGPAGSPPDGGDICVQVSLHKRSVYYFFYPLLALFTVLRVLVLNFGVL
FAWLCERMSRAMVARPKQRAADEHANKVCKQDSGEQIRNSHKQAFEYISVALRIDEDDKV
HKEQAVQWYKRGIAELERGIAIKVAENGEKYERDKRLQAKMITNLIMAKDRLELLAKLCS
GPAQRDIYTESSNQSYHNGHLRSVSLLLAVSGAVPKKRDSLTTHSSHSLPRPKHTAKKTL
AAGHGGHQHSPSFSGPSSSLTQHRPAPQSNSNKGKAGCKPTTTTTPTSMSPLKNRDMKNL
KNVDSKRANLILSEIIDSGSSVRFEDIAGQELAKQALQEIVILPALRPELFTGLRAPARG
LLLFGPPGNGKTMLAKAVAMESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSI
IFIDEIDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVL
RRFAKRVYVALPTEETRLKLVKNLLEKHGNPLALKELSQLARMTEGYSGSDLTSLAKDAS
LGPIRELRPEQVRNMAANEVRNIRFSDFVESLKKIKRSVGPQTLDLYVRWNKDYGDTTGV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagttttccggaaggaagaagcagcagaaagaagcgaggccctgcagggtccccgccc
gacggaggggacatctgcgtccaggtgtcactgcataaacgaagtgtgtactacttcttc
tacccactgctggcgttgtttacagtgctccgtgtcctagtcttgaattttggcgtactc
ttcgcctggctgtgcgagcggatgtctcgcgctatggttgcgagacccaaacaacgggca
gcagatgaacatgcgaacaaggtgtgcaagcaggacagcggcgagcagatccgaaacagc
cacaaacaagcattcgagtacatctcagtggctctgagaattgacgaggatgacaaagtg
cacaaggaacaggcagtccagtggtacaagcgcggaatcgcagagctcgagaggggcatc
gcgatcaaggtagctgaaaacggcgagaaatatgaacgtgataaacgtctacaggccaag
atgatcaccaatctgatcatggcaaaggatcgcctggagctcttagcaaagctgtgttca
gggccagctcagagagacatctatacagagagctcaaaccagtcgtaccataacggccat
ctacgctcagtctccttgctcttggcagtaagtggagctgtacccaaaaagagggactcc
ctgactactcactccagtcactccctcccacgaccaaagcatacggcaaaaaaaaccttg
gcggcaggccacgggggccaccagcactcccccagcttcagtgggccctccagcagtctc
acacagcacagaccggccccccagtccaacagcaacaagggtaaagcgggctgtaaaccc
accaccaccaccactcccacatctatgtccccactgaagaaccgggacatgaagaacttg
aagaatgtagacagcaagcgtgccaacctcatcctcagcgagatcatagacagtggctca
tcagtgaggttcgaggacattgctggccaggagctggctaagcaggccctacaggaaata
gtcatcctgcctgcactgaggccagagttgttcacaggcttgagggctccagcacgaggc
cttctgctcttcggtcctcctggcaacggaaagacgatgctggctaaagcagtggccatg
gagtccaacgccacatttttcaacataagtgcagccagcttgacctcgaaatatgtgggg
gagggagagaagctggtgcgagctctgtttgccgtcgccagagaactgcaaccctcgatc
atcttcatagatgagattgacagtctactctgtgagaggagagagggagagcatgatgcc
agcagacgactcaagactgagttcttgattgaatttgatggggtgcagtctggtggggat
gagcgggtgttggtgatgggagccaccaacagacctcaggagctggacgaagctgttctt
aggcgatttgcaaaacgggtgtatgtggctttaccaacagaagagacacggctaaaactg
gtcaagaaccttttggagaagcacggaaatcctctcgcactgaaagaactgtcacagcta
gccagaatgacagaaggctattctggcagtgacctgacctcgctggccaaagatgcgtcc
ctcggtcccatcagagagttgcgtccagaacaagtcaggaacatggccgcaaacgaggtg
aggaatatcaggttctctgatttcgtggagtcactgaagaagatcaagaggagtgtcgga
ccacaaacgctggacctgtatgtgcgctggaacaaggactatggggacaccactggtgta
tga
DBGET
integrated database retrieval system
