Oncorhynchus mykiss (rainbow trout): 110486153 Help Entry 110486153         CDS       T07259                                  Symbol col1a1a Name (RefSeq) collagen, type I, alpha 1a   KO K06236   collagen type I alpha Organism omy  Oncorhynchus mykiss (rainbow trout) Pathway omy04510   Focal adhesion omy04512   ECM-receptor interaction omy04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:omy00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110486153 (col1a1a)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     110486153 (col1a1a)   09142 Cell motility    04820 Cytoskeleton in muscle cells     110486153 (col1a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:omy00536]     110486153 (col1a1a) Glycosaminoglycan binding proteins [BR:omy00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110486153 (col1a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  110486153 NCBI-ProteinID:  XP_036796700 UniProt:  A0A8C7R225 LinkDB All DBs Position 13:complement(33421300..33442778) Genome browser AA seq 1449 aa AA seqDB search MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQFYNDRDVWKPEPCQICVCDSGT VMCDEVICEDTSDCPNPVIPHDECCPICPDDGFQEPKVEGPQGDRGAKGEPGPAGFPGND GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGGMSMPGPMGPMGPRGPPGPPGS SGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGDDGESGKPGRPGERGASGPQGARGF PGTPGLPGIKGHRGFSGLDGAKGESGPAGPKGEGGASGENGAAGAMGPRGLPGERGRAGP NGAAGARGNDGAAGAAGPPGPTGPAGAPGFPGGPGAKGEVGAQGARGGEGPQGSRGEAGN PGPAGAAGPAGNNGADGNPGTKGAPGSSGIAGAPGFPGPRGPPGPQGAGGAPGPKGNTGE VGANGAKGEAGAKGESGPAGVQGPAGPAGEEGKRGGRGEPGGAGARGAPGERGAPGSRGF PGSDGASGPKGGPGERGGAGVAGAKGNTGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP SGAGGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPGGAVGAPGKDGD VGAPGAPGVAGPSGERGEQGAGGPPGFQGLPGPQGAIGETGKPGEQGLPGEGGAPGSAGS RGDRGFPGERGAPGPSGPAGARGSPGSAGNDGGKGEAGAAGAPGGQGPPGLQGMPGERGA GGLPGLKGDRGDQGVKGADGAGGKDGVRGMTGPIGPNGPAGSPGDKGETGAPGPGGPTGA RGAPGERGESGAPGPAGFAGPPGGDGQPGAKGEAGDNGAKGDGGAQGPAGPTGAPGPQGP AGNTGAKGARGAAGPPGATGFPGAAGRVGPPGPSGNNGPPGPPGPGGKEGQKGNRGETGP AGRPGELGAAGPPGAQGEKGQPGGDGPNGPPGTPGPQGIGGQRGIVGLPGQRGERGFPGL AGQLGEPGKQGPGGPSGERGPPGPMGPPGLAGAPGESGREGTPGNEGSAGRDGAAGPKGE RGESGAAGASGAPGPPGAPGPVGPAGKSGDRGESGPAGPAGIAGPAGPRGSSGPAGARGD KGEAGEAGERGMKGHRGFTGMQGPSGPSGPSGESGPAGASGPAGPRGPSGSAGAAGKDGM SGLPGPIGPPGPRGRSGEMGPSGPPGPPGPPGPPGPPGGGFDMGFIAQPAQEKAPDPFRH FRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTKKNPARTCRDLKMCHPDWKSGEYW IDPDQGCTQDAIKVYCNMETGETCVYPTEAEIPKKSWYTSKNIKEKKHVWFGEAMTDGFQ FEYGSEGSSAQDVNIQLTFLRLMATEASQNITYHCKNSIAYMDQQSGNLKKSLLLQGSNE IEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFG IEVGPVCFL NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgctgttgctcagcgcaacagtgcttttggca agaggacaaggcgaggacgatcgcactgccggcagctgtacgttggacggtcaattctac aacgacagagatgtctggaaacccgagccatgccagatctgcgtgtgcgatagcggcacc gtcatgtgcgacgaagttatctgcgaggacacatccgactgccccaatccagtgatcccc cacgacgaatgctgccccatctgccccgacgacggcttccaggagccaaaggttgaggga ccccagggtgatcgtggagccaagggagagccaggacctgctggtttccccggcaacgat ggtattcccggccagcccggccttcctggacccccaggcccccctggaccccctggtctt ggcggaaacttctcccctcagatgtctggtggttttgatgagaagagcggcggtggcatg tccatgcccggccccatgggccccatgggtccccgtggtcccccaggacctcctggctca agtggacctcagggtttcactggcccccctggtgagcctggtgaggctggttcttctggt cccatgggcccccgtggtcctgctggtccccctggcaagaacggagatgatggtgagtct ggcaagcctggtcgccccggtgagcgtggagcttccggcccacagggagctcgtggattc cccggaacccccggccttcccggcatcaagggacacagaggattcagcggtcttgacgga gctaagggagagtctggccctgctggacccaagggagagggtggtgcatccggtgagaac ggagccgctggagccatgggaccccgtggtctgcctggtgagagaggccgtgctggtccc aacggagctgctggtgctcgtggtaacgatggtgctgctggtgctgctggtcctcctggc cccactggccccgctggtgcccctggtttccccggtggccctggagccaagggagaggtt ggtgcccagggagctcgtggtggcgagggaccccagggatcccgtggagaggctggtaac cccggacccgctggcgctgctggccccgctggaaacaacggtgctgacggaaaccccggt accaagggtgcccctggttcttctggtattgctggtgctcctggcttccctggaccccgt ggaccccccggaccccagggtgctggtggagctcccggacccaagggtaacactggtgag gttggtgctaatggagccaaaggagaggctggtgctaagggagagtctggccccgctgga gtccagggacccgccggccctgctggtgaggaaggcaagcgaggaggccgtggtgagccc ggtggtgctggtgcccgtggagcccccggcgagcgcggtgcccctggtagccgtggtttc cctggttctgatggagcttctggccccaagggtggccctggtgagcgtggtggtgccgga gttgctggagctaagggtaacactggtgagcctggccgcaacggcgagcctggtatgcct ggatccaagggtatgactggtagccctggcagccccggtcccgatggcaagactggcccc tctggtgccggtggtcaagatggtcgccccggacctcccggccccgttggagccagaggc cagcccggagtcatgggattccccggacctaagggagccgcaggtgagggtggcaagcct ggtgagagaggagtcatgggacccggtggtgctgttggtgctcccggcaaggatggtgat gttggtgctcctggtgctcccggtgttgccggaccttctggagaacgaggcgagcaggga gccggtggcccccctggattccagggacttccaggaccccaaggcgctattggtgagact ggaaagcccggagagcagggtcttcccggtgagggtggtgcccctggttccgcaggatcc agaggtgacagaggtttccccggtgagcgtggtgcccctggcccatctggacccgctggt gcccgtggctctccaggctctgctggtaacgatggtggtaagggagaggctggtgccgca ggtgcccccggtggccaaggaccccctggcctgcagggaatgcccggagagcgtggtgct ggtggtctgccaggcctgaagggagacagaggtgaccaaggagtcaagggtgctgatggc gccggtggtaaggatggcgtccgtggtatgactggccccattggacccaacggccctgct ggatctcctggtgacaagggagagactggcgctcctggacctggtggacctactggtgcc cgtggtgcacctggtgagcgcggtgagtctggcgcccctggacccgctggattcgctggg cctcctggtggtgacggtcagcctggtgctaagggagaggctggagataacggtgccaag ggtgacggtggtgctcagggacccgctggacctacaggagcccctggacctcagggtccc gctggaaacaccggagctaagggcgcccgtggtgctgctggtccccctggtgccactggt ttccccggtgctgctggtagagttggacctcctggcccatctggcaacaacggacccccc ggacccccaggccctggtggaaaggaaggacagaagggtaaccgtggtgagactggcccc gccggtcgtcctggtgagctcggcgctgccggaccccctggtgcccagggagagaaggga cagcctggtggagatggtcccaatggaccccctggaactcccggacctcagggtattggt ggacagcgtggtattgttggtctgcccggacaaagaggcgagcgcggtttccccggcctt gccggacaactgggagagcctggcaagcagggacctggtggcccctctggtgagcgtgga ccccccggacccatgggaccccctggactggctggagcacctggtgagtctggtcgcgag ggaactcctggtaacgagggatctgctggtcgcgatggtgctgctggacccaagggagag cgtggtgagtctggtgccgctggtgcttccggtgcccccggaccccctggtgcccctgga cccgtcggccctgctggaaagtctggtgaccgtggagagtctggtcctgctggccccgct ggtattgctggccctgctggtccccgtggctcatcaggacccgctggagctcgtggagac aagggagaggctggcgaggctggagagagaggcatgaagggacatagaggattcactggc atgcagggaccctctggcccctctggaccatctggagagtcaggacctgctggagcctct ggccccgctggacctagaggaccttctggatctgctggtgccgccggtaaggatggtatg agcggtctgcccggccccatcggacctcccggaccccgtggtcgctctggagagatggga ccctctggaccccctggccctcccggtccccctggcccccccggacctcccggcggtgga ttcgacatgggcttcattgctcagcccgctcaggagaaggcccccgatcccttccgtcac ttccgcgccgacgacgccaacgtgatgcgcgaccgcgacctggaggttgacaccactctc aagagcctgagccagcagattgagaacatccgctctcccgagggcaccaagaagaatccc gcccgcacctgcagagacctgaagatgtgccaccccgactggaagagcggcgagtactgg atcgaccccgaccagggctgcacccaggacgccatcaaggtttactgcaacatggagacc ggcgagacctgcgtctaccccaccgaggcagaaatccccaagaagagctggtacaccagc aagaacatcaaggagaagaagcacgtctggttcggcgaggcaatgaccgatggcttccag ttcgagtatggcagcgagggttccagtgctcaggatgttaacatccagctgaccttcctg cgccttatggccactgaggccagccagaacatcacataccactgcaagaacagcatcgcc tacatggaccagcagtccggcaacctcaagaagtccctgctgctccagggctccaacgag atcgagatcagagccgagggcaacagccgcttcacatacagcgtcaccgaggacggctgc acgtcgcacaccggtgcatggggcaagacagtcatcgactacaagacaacgaaaacatcc cgtctgcctattattgacatcgctcctatggacgttggtgcacccaatcaggaatttggc attgaagttggcccagtctgcttcttgtaa

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